TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146818.2 - phase: 0 /pseudo
         (1427 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p...    33  0.24
AV779571                                                               31  1.2
TC8556                                                                 29  4.6
TC16947 homologue to UP|HIS7_PEA (Q43072) Imidazoleglycerol-phos...    29  4.6
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p...    29  6.0
TC9126                                                                 29  6.0
TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment),...    28  7.8

>TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial (59%)
          Length = 564

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/55 (36%), Positives = 34/55 (61%)
 Frame = -2

Query: 1171 LMMLA*LVANQFLLLLILLYVYLKILGLFMVMSLVIDV*LEDCYISPPHALI*LL 1225
            +M++A LV    L+LLILL + + +L LF+ + L++D+      + P   LI*L+
Sbjct: 296  VMVMAMLVLLLLLVLLILLVLLVVLLTLFVTVDLILDLVHNPLLVLPSMVLI*LV 132


>AV779571 
          Length = 538

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 21/66 (31%), Positives = 40/66 (59%)
 Frame = -2

Query: 795 GM*NFLIWNFLSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL*ILLKIMMRFLMKIHLLIL 854
           G+ N LI   L + L+LL   L +  +++  LT+  ++ +L*+LLK+ +R    + LLI+
Sbjct: 336 GIANLLIIYHLLLSLLLLLLLLLLIVIMILSLTIE*VL-ML*VLLKMRLRLQQLLILLII 160

Query: 855 KKGMMK 860
            K +++
Sbjct: 159 LKNLLR 142


>TC8556 
          Length = 759

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/44 (40%), Positives = 22/44 (49%)
 Frame = +2

Query: 1065 MVLSKQVGNGLRSLLSFFMLRDSLKLMQITHYLLKSLLLPTLWF 1108
            M L+ Q+G  LRS   +FML  S +L    H L   L L T  F
Sbjct: 500  M*LN*QLGLDLRSFFLYFMLSTSARLQSAVHILDSGLRLRTCLF 631


>TC16947 homologue to UP|HIS7_PEA (Q43072) Imidazoleglycerol-phosphate
           dehydratase  (IGPD) , partial (31%)
          Length = 499

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 800 LIWNFLSIPLVLLQFPLHIFTLIVKLLTLCLL-MTLL*ILLKIMMRFLMKIHLLILKK 856
           L W  L + +V L+FP  I  LI  L   CL+ M  L ++  +M+   MK+ LL+L++
Sbjct: 293 LTWMGLELLIVALEFPSLIICLINLLHMDCLMYM*RLLVIYILMIITQMKMSLLLLER 466


>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
          Length = 670

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 26/77 (33%), Positives = 35/77 (44%)
 Frame = +2

Query: 1336 FMI*SKLLHVYLYSTVITRVHFTYQLIQCFMNAPST*TLIVI*YVKRFKLELCVCYQSPP 1395
            F+  S LLH +   T I  +    QL+ CFMN  +  TLI + + K  K    + +    
Sbjct: 38   FVFLSSLLHCF---TAIVSLLDILQLMLCFMNVLNISTLIAMLFGKSCKPSSFIYFLFQV 208

Query: 1396 NIKQLTCLPRLLVHDNF 1412
             IKQ T  P  L  D F
Sbjct: 209  LIKQPTF*PSPLNLDLF 259


>TC9126 
          Length = 1013

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +2

Query: 801 IWNFLSIPLVLLQFPLHIFTLIVKLLTLCLLM 832
           I +FL+   + L F +++F L+ KLL++CLL+
Sbjct: 611 ITDFLT*VYIRLFFQVYLFQLLEKLLSMCLLL 706


>TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment), partial
           (63%)
          Length = 981

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = +3

Query: 820 TLIVKLLTLCLLMTLL*ILLKIMMRFLMKIHLLILK 855
           T +  +L + LLM++ * L+ + +RFL+++ +LIL+
Sbjct: 717 TSLFLILEVVLLMSVS*PLIMVFLRFLLQMEILILE 824


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.370    0.167    0.644 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,701,833
Number of Sequences: 28460
Number of extensions: 460718
Number of successful extensions: 6972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 2863
Number of HSP's gapped (non-prelim): 4525
length of query: 1427
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1325
effective length of database: 1,994,680
effective search space: 2642951000
effective search space used: 2642951000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 61 (28.1 bits)