TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146817.2 + phase: 0 
         (145 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV428619                                                               66  3e-12
AV780452                                                               25  6.9
BP037714                                                               25  6.9
BP034176                                                               24  9.0

>AV428619 
          Length = 405

 Score = 65.9 bits (159), Expect = 3e-12
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +1

Query: 44  NSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEAT 103
           N L++ E+  MK  CDEKR+VYEYM  + +E+G+S  GK E  + + LQ A DEY+EEAT
Sbjct: 70  NELRIVEE--MKRQCDEKRDVYEYMATRFRERGRSKGGKRETFSLQQLQTARDEYDEEAT 243

Query: 104 L 104
           L
Sbjct: 244 L 246


>AV780452 
          Length = 547

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 121 IKPLKHSNFNERNCRDKFRQDPC 143
           I  + HSNF+  NC +    +PC
Sbjct: 87  IHVITHSNFSYSNCSEFKESEPC 19


>BP037714 
          Length = 463

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
 Frame = +1

Query: 29  IRVPRGVN--NQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHI 86
           IR  R  N  N+I  D    K+K K   +       ++      +PK   +  +   EH 
Sbjct: 58  IRK*RAANELNRILHDGKR-KIKAKPTGRRQFSTPEDMLAGTSNRPKSFRQKEA---EHE 225

Query: 87  TSRPLQAAHDEYEEEA---TLAKQGCPHIAKLGKGRRIKP 123
              P Q + DE EEE+   T   +G   I ++     +KP
Sbjct: 226 EEDPEQVSEDESEEESEEETKKNKGTQGIIEIENPNLVKP 345


>BP034176 
          Length = 604

 Score = 24.3 bits (51), Expect = 9.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 83  GEHITSRPLQAAHDEYEEEATLAKQGC--PHIAKLGKGRRIKPLKHSNFNERNCRDKFRQ 140
           GE   S   Q    EY+++  L   GC  PH          + L H + +E + RD  R+
Sbjct: 602 GEETVSSACQTHAQEYQQQCGLQLGGCADPH----------EHLSHQHKHEPSHRDNHRE 453


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,497,060
Number of Sequences: 28460
Number of extensions: 28972
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 145
length of database: 4,897,600
effective HSP length: 82
effective length of query: 63
effective length of database: 2,563,880
effective search space: 161524440
effective search space used: 161524440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)