BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.7 - phase: 0 /pseudo
(97 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP863984 CEN/TFL1-like GTP-associated binding protein [Lotus cor... 114 2e-27
TC16179 weakly similar to UP|Q7PXR0 (Q7PXR0) AgCP12009, partial ... 25 1.7
AU089275 25 2.2
TC10876 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 25 2.9
TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-... 25 2.9
TC16444 25 2.9
TC7921 homologue to UP|Q8LHP9 (Q8LHP9) OJ1008_F01.11 protein, pa... 24 3.8
CB826792 24 3.8
TC20166 24 4.9
CB827703 23 6.4
TC17465 similar to PIR|T49142|T49142 CCR4-associated factor 1-li... 23 6.4
TC12462 weakly similar to UP|Q8TW78 (Q8TW78) Uncharacterized mem... 23 6.4
TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper... 23 6.4
TC10374 similar to UP|Q84WX1 (Q84WX1) BHLH transcription factor,... 23 8.4
TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%) 23 8.4
>NP863984 CEN/TFL1-like GTP-associated binding protein [Lotus corniculatus
var. japonicus]
Length = 525
Score = 114 bits (286), Expect = 2e-27
Identities = 50/81 (61%), Positives = 65/81 (79%)
Frame = +1
Query: 6 EPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYT 65
+PL VGRV+G+V+D F S+++ V+++ KQV NGHE PS + KP+VDIGG DMRS +T
Sbjct: 22 DPLVVGRVVGDVLDSFTTSMKLTVSFNNKQVFNGHEFFPSTINTKPKVDIGGGDMRSFFT 201
Query: 66 LIMTDPDAPSPSDPHLREHLH 86
LIMTDPD P PSDP+L+EHLH
Sbjct: 202 LIMTDPDVPGPSDPYLKEHLH 264
>TC16179 weakly similar to UP|Q7PXR0 (Q7PXR0) AgCP12009, partial (20%)
Length = 814
Score = 25.4 bits (54), Expect = 1.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 64 YTLIMTDPDAPSPSDP 79
YT+ MT P P PS P
Sbjct: 93 YTVFMTPPSTPKPSSP 140
>AU089275
Length = 590
Score = 25.0 bits (53), Expect = 2.2
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 88 YSRYHRCLFW 97
YS +HRCLFW
Sbjct: 29 YSWHHRCLFW 58
>TC10876 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (23%)
Length = 689
Score = 24.6 bits (52), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = -2
Query: 58 EDMRSAYTLIMT--DPDAPSPSDPHLREHLH 86
E+ S +TL++T PD P P P L H+H
Sbjct: 571 ENNISNFTLLITKSSPDLPLPFYPPLITHMH 479
>TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-cell
leukemia, homeobox 1), partial (5%)
Length = 1304
Score = 24.6 bits (52), Expect = 2.9
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +3
Query: 74 PSPSDPHLREHLH*YSRYH 92
PSP+ HLR HLH R+H
Sbjct: 174 PSPNPLHLRPHLH---RHH 221
>TC16444
Length = 499
Score = 24.6 bits (52), Expect = 2.9
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -1
Query: 23 PSVRMNVTYSTKQVANGHELMPSIVMNKPRV 53
P +R + + + K V + LMPSI KPR+
Sbjct: 352 PGLRSSFS*N*KMVLHSTYLMPSISSQKPRI 260
>TC7921 homologue to UP|Q8LHP9 (Q8LHP9) OJ1008_F01.11 protein, partial (7%)
Length = 1202
Score = 24.3 bits (51), Expect = 3.8
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +3
Query: 72 DAPSPSDPHLREHLH*YSRYHRCL 95
D P P+ H HLH S +HR L
Sbjct: 345 DLPPPTPSHRFFHLHQISCHHRLL 416
>CB826792
Length = 485
Score = 24.3 bits (51), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (60%)
Frame = +3
Query: 5 LEPLSVGRVIGEVVDIFNPSVRMNVT 30
++PL R I E ++FN ++ N+T
Sbjct: 99 IKPLCKNRKIDEAKEVFNDMMKRNIT 176
>TC20166
Length = 567
Score = 23.9 bits (50), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 17 VVDIFNPSVRMNVTYSTKQVANGHE 41
V D+ NPS+R +S + + GHE
Sbjct: 202 VTDVDNPSLREWGIWSVRNMLEGHE 276
>CB827703
Length = 555
Score = 23.5 bits (49), Expect = 6.4
Identities = 7/29 (24%), Positives = 16/29 (55%)
Frame = -3
Query: 17 VVDIFNPSVRMNVTYSTKQVANGHELMPS 45
++ NP+ R +++ K +GH+ P+
Sbjct: 337 ILPFVNPNPRQQISHQQKPFLHGHQTTPA 251
>TC17465 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(57%)
Length = 538
Score = 23.5 bits (49), Expect = 6.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 52 RVDIGGEDMRSAYTLIMTDPDAPSPSD 78
R ++G R + ++ DPD P PSD
Sbjct: 140 RRELGHVPQRL*FWVLGEDPDTPKPSD 220
>TC12462 weakly similar to UP|Q8TW78 (Q8TW78) Uncharacterized membrane
protein specific for M.kandleri, MK-9 family, partial
(6%)
Length = 812
Score = 23.5 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 65 TLIMTDPDAPSPSDPHLREHLH 86
+L TDP +P PS P L H
Sbjct: 91 SLTTTDPSSPPPSTPLLLPGFH 156
>TC17027 similar to UP|Q93XA5 (Q93XA5) Homeodomain leucine zipper protein
HDZ1 (Fragment), partial (34%)
Length = 854
Score = 23.5 bits (49), Expect = 6.4
Identities = 11/19 (57%), Positives = 12/19 (62%), Gaps = 5/19 (26%)
Frame = -1
Query: 73 APSPSDP-----HLREHLH 86
AP PS+P HLR HLH
Sbjct: 656 APLPSNPSSLSLHLRSHLH 600
>TC10374 similar to UP|Q84WX1 (Q84WX1) BHLH transcription factor, partial
(6%)
Length = 494
Score = 23.1 bits (48), Expect = 8.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 74 PSPSDPHLREHLH 86
P PS P L EHLH
Sbjct: 108 PKPSRPVLTEHLH 70
>TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%)
Length = 544
Score = 23.1 bits (48), Expect = 8.4
Identities = 13/31 (41%), Positives = 15/31 (47%), Gaps = 1/31 (3%)
Frame = -3
Query: 24 SVRMNV-TYSTKQVANGHELMPSIVMNKPRV 53
S RM V T S + GH P V +PRV
Sbjct: 254 SARMKVWTISDRSTIEGHNP*PKAVSRRPRV 162
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,617,045
Number of Sequences: 28460
Number of extensions: 18328
Number of successful extensions: 146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of query: 97
length of database: 4,897,600
effective HSP length: 73
effective length of query: 24
effective length of database: 2,820,020
effective search space: 67680480
effective search space used: 67680480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)
Medicago: description of AC146807.7