BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.6 + phase: 0
(374 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15456 weakly similar to UP|AAS49051 (AAS49051) At5g57740, part... 132 1e-31
AV417185 92 1e-19
TC9041 similar to UP|Q8LLW2 (Q8LLW2) Receptor-like kinase Xa21-b... 66 1e-11
AI967607 62 2e-10
TC11192 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {Ar... 45 1e-05
BP035448 44 3e-05
BI419497 44 6e-05
BP048616 43 7e-05
BP035597 39 0.001
TC14269 weakly similar to UP|Q13484 (Q13484) Ankyrin G119, parti... 35 0.026
TC11949 33 0.059
TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro prote... 32 0.17
BI418653 32 0.17
TC13101 similar to PIR|E86378|E86378 protein F21J9.10 [imported]... 32 0.17
BP044757 32 0.22
TC17692 weakly similar to UP|Q8LLW2 (Q8LLW2) Receptor-like kinas... 32 0.22
TC12446 similar to PIR|T51854|T51854 RING-H2 finger protein RHF2... 31 0.38
TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine ... 30 0.50
TC11492 30 0.65
TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing... 30 0.65
>TC15456 weakly similar to UP|AAS49051 (AAS49051) At5g57740, partial (24%)
Length = 1013
Score = 132 bits (331), Expect = 1e-31
Identities = 70/147 (47%), Positives = 89/147 (59%), Gaps = 5/147 (3%)
Frame = +2
Query: 129 WLEPLLAPSSDTIVSSFPTSNYLLLPLMSVLNIAREYGLHSPTTSSNEIDFCAVCLERPC 188
WLE +L + P S YL LPLMS+L IARE G + +D CAVCLER C
Sbjct: 2 WLEDILKTPPADHLQVLP-SPYLSLPLMSILTIARECGWRMSELAPTCLDPCAVCLERKC 178
Query: 189 TVAAEGCMHELCVRCALYLCSTANVS-SEMHGPPGSVPCPLCRHGIISFVKLPSFQPKEN 247
V+ EGC HE C +CALYLCST + S + HGPPGS+ CPLCRHGI+SF KLP +P
Sbjct: 179 MVSVEGCDHEFCTQCALYLCSTNSTSTTTTHGPPGSIACPLCRHGIVSFAKLPDTRPLPK 358
Query: 248 KL----HASLSMCTPCIQHPRDIDQSS 270
++ + SL+ CT + D D ++
Sbjct: 359 EMQRTTNLSLTFCTCSSEVLGDADMTT 439
>AV417185
Length = 205
Score = 92.4 bits (228), Expect = 1e-19
Identities = 44/66 (66%), Positives = 54/66 (81%)
Frame = +1
Query: 26 SELSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTP 85
S L + +N+T+D GITALHMAALNG+ + VQLLLDL A+AS T GT++DLIG+GSTP
Sbjct: 7 SALCEIINRTSDGGITALHMAALNGHVESVQLLLDLGASASEVTVEDGTTIDLIGSGSTP 186
Query: 86 LHYAAC 91
LHYAAC
Sbjct: 187LHYAAC 204
>TC9041 similar to UP|Q8LLW2 (Q8LLW2) Receptor-like kinase Xa21-binding
protein 3, partial (43%)
Length = 848
Score = 65.9 bits (159), Expect = 1e-11
Identities = 39/94 (41%), Positives = 54/94 (56%)
Frame = +1
Query: 29 SKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHY 88
++FVN G T LH+AA +C+ LLD A A+T YG GSTPLH
Sbjct: 577 ARFVNIRDGNGATPLHLAARQRRHECLHSLLDNGALVCASTGGYGFP------GSTPLHM 738
Query: 89 AACGGNLKCCQILLSKGATRMALNCNGWLPLDVA 122
AA GG++ C ++LL+ GA R+ L+ +G +P VA
Sbjct: 739 AARGGSVDCVRMLLAWGAERLQLDSSGRIPFTVA 840
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 36/125 (28%)
Frame = +1
Query: 40 ITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSM-------------DLIGAGS--- 83
++ LH+AA+NG + + +LLD N H T + LI AG+
Sbjct: 274 LSPLHVAAVNGRIEVLSMLLDRNVKVDVLNRHKQTPLMLAVIHGRTGCVEKLIDAGANIL 453
Query: 84 --------TPLHYAACGGNLKCCQILLSKGATRMALNC------------NGWLPLDVAR 123
T LHYAA G+L C + +LS + + NG PL +A
Sbjct: 454 MFDSLRRRTCLHYAAYFGHLDCLKAILSAAHSTPVADSWGFARFVNIRDGNGATPLHLAA 633
Query: 124 MWGRH 128
RH
Sbjct: 634 RQRRH 648
>AI967607
Length = 378
Score = 62.0 bits (149), Expect = 2e-10
Identities = 38/84 (45%), Positives = 48/84 (56%)
Frame = +1
Query: 39 GITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCC 98
G T LH+AA +CV +LLD A AAT YG GSTPLH AA GG+L C
Sbjct: 28 GATPLHLAARQRRPECVHILLDSGALVCAATGGYGCP------GSTPLHLAARGGSLDCI 189
Query: 99 QILLSKGATRMALNCNGWLPLDVA 122
+ LL+ GA R+ + +G +P VA
Sbjct: 190 RELLAWGADRLQRDASGRIPYMVA 261
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/75 (38%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Frame = +1
Query: 72 YGTSMDLIGAGSTPLHYAACGGNLKCCQILLSKGATRMA----LNCNGWLPLDVARMWGR 127
+GTS D G G+TPLH AA +C ILL GA A C G PL +A G
Sbjct: 4 FGTSRD--GKGATPLHLAARQRRPECVHILLDSGALVCAATGGYGCPGSTPLHLAARGGS 177
Query: 128 -HWLEPLLAPSSDTI 141
+ LLA +D +
Sbjct: 178 LDCIRELLAWGADRL 222
>TC11192 similar to GB|AAO63323.1|28950799|BT005259 At2g03430 {Arabidopsis
thaliana;}, partial (70%)
Length = 597
Score = 45.4 bits (106), Expect = 1e-05
Identities = 37/109 (33%), Positives = 53/109 (47%)
Frame = +3
Query: 19 SFTSCRCSELSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDL 78
+F + LS+ ++ + + LH+AA +G+ V++LL +A+AS S D
Sbjct: 126 TFQASSPETLSESLSLRNEDARSLLHVAASSGHSQVVKILLSADASASVVN-----SAD- 287
Query: 79 IGAGSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVARMWGR 127
G PLH AA GNL+ + LLSKGA N G L A GR
Sbjct: 288 -DEGWAPLHSAASIGNLEIVEALLSKGADVNLKNGGGRTALHYAASKGR 431
Score = 40.0 bits (92), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +3
Query: 32 VNKTADAGITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAAC 91
VN G TALH AA G ++L+ +A + G TPLH AA
Sbjct: 372 VNLKNGGGRTALHYAASKGRVKIAEILISHDAKINIKDK----------VGCTPLHRAAS 521
Query: 92 GGNLKCCQILLSKGA 106
GN + C++L+ +GA
Sbjct: 522 TGNSELCELLIEEGA 566
>BP035448
Length = 509
Score = 44.3 bits (103), Expect = 3e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -1
Query: 39 GITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGA-GSTPLHYAACGGNLKC 97
G LH A G+ VQL+L +++ T H ++ I + G TPLH+AA G +
Sbjct: 452 GAIPLHDACAGGFTQIVQLIL----HSANGTEHIKRMLESIDSEGDTPLHHAARGEHADV 285
Query: 98 CQILLSKGATRMALNCNGWLPLDV 121
++LLS GA+ N G +P ++
Sbjct: 284 IRLLLSNGASTTKTNLYGKIPAEL 213
>BI419497
Length = 473
Score = 43.5 bits (101), Expect = 6e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 43 LHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILL 102
LH AA G+ D ++LLL L+A+ G TPLH+AA GNL+ C +L+
Sbjct: 9 LHWAAYKGFADSIRLLLFLDAHRGRQDKE----------GCTPLHWAAIRGNLEACTVLV 158
Query: 103 SKGATR--MALNCNGWLPLDVA 122
G M + G P +A
Sbjct: 159 QAGKKEDLMVTDNTGLTPAQLA 224
>BP048616
Length = 564
Score = 43.1 bits (100), Expect = 7e-05
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = -1
Query: 39 GITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCC 98
G LH+A L V+LL+ A+ +A + G TPLHY GN
Sbjct: 522 GARVLHLACLTSDAVMVELLIQCGADVNA----------IDSRGCTPLHYCIMRGNNASA 373
Query: 99 QILLSKGATRMALNCNGWLPLDVA 122
++L+S+GA A++ G PL +A
Sbjct: 372 KVLISRGANPTAVDKEGNTPLKLA 301
>BP035597
Length = 467
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = -1
Query: 39 GITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCC 98
G+TALH AA G+ D V +L++ + G PLH A GG+ +
Sbjct: 467 GLTALHYAACKGHKDVVLMLVEAGWDLECEDEE----------GHVPLHMAVEGGDFETV 318
Query: 99 QILLSKGATRMALNCNGWLP 118
IL+ +G A N G P
Sbjct: 317 PILVDQGVNLNARNSXGCYP 258
Score = 28.5 bits (62), Expect = 1.9
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = -1
Query: 82 GSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVARMWGRHWLEPLL 134
G T LHYAAC G+ +L+ G + G +PL +A G P+L
Sbjct: 467 GLTALHYAACKGHKDVVLMLVEAGWDLECEDEEGHVPLHMAVEGGDFETVPIL 309
>TC14269 weakly similar to UP|Q13484 (Q13484) Ankyrin G119, partial (3%)
Length = 656
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/68 (33%), Positives = 30/68 (43%)
Frame = +1
Query: 39 GITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCC 98
G+T LH+AA G+ + LL+ AN A T G TPLH AA
Sbjct: 70 GVTPLHLAAEGGHLGVMDELLERGANIDARTKG--------ACGWTPLHIAAKERRKDAV 225
Query: 99 QILLSKGA 106
+ L+ GA
Sbjct: 226 KFLIENGA 249
Score = 33.1 bits (74), Expect = 0.077
Identities = 19/43 (44%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +1
Query: 82 GSTPLHYAACGGNLKCCQILLSKGAT--RMALNCNGWLPLDVA 122
G TPLH AA GG+L LL +GA GW PL +A
Sbjct: 70 GVTPLHLAAEGGHLGVMDELLERGANIDARTKGACGWTPLHIA 198
>TC11949
Length = 780
Score = 33.5 bits (75), Expect = 0.059
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Frame = +3
Query: 180 CAVCLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVP---CPLCRHG 232
C++C++ + C H C CA CS A+V+ + G + P CPLCR G
Sbjct: 129 CSICMDTVFDPVSLTCGHIFCYSCA---CSAASVTI-VDGLKAAXPKEKCPLCREG 284
>TC13791 weakly similar to UP|RO52_HUMAN (P19474) 52 kDa Ro protein (Sjogren
syndrome type A antigen) (SS-A) (Ro(SS-A)) (52 kDa
ribonucleoprotein autoantigen Ro/SS-A), partial (5%)
Length = 545
Score = 32.0 bits (71), Expect = 0.17
Identities = 18/57 (31%), Positives = 24/57 (41%), Gaps = 2/57 (3%)
Frame = +3
Query: 180 CAVCLERPCTVAAEGCMHELCVRCALYLCSTANVS--SEMHGPPGSVPCPLCRHGII 234
C +CL+ + C H C CA CS A+VS + CPLCR +
Sbjct: 60 CPICLDTVFDPVSLTCGHIFCYMCA---CSAASVSIVDGLKSAVTKQKCPLCRENAV 221
>BI418653
Length = 531
Score = 32.0 bits (71), Expect = 0.17
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 9/63 (14%)
Frame = +3
Query: 82 GSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPL---------DVARMWGRHWLEP 132
G T LH AAC G +LL KGA + G PL DV ++ +H +P
Sbjct: 273 GRTALHIAACQGLTHVVALLLEKGAQVDTKDRWGSTPLADAIFYKNNDVIKLMEKHGAKP 452
Query: 133 LLA 135
L+A
Sbjct: 453 LMA 461
>TC13101 similar to PIR|E86378|E86378 protein F21J9.10 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(47%)
Length = 588
Score = 32.0 bits (71), Expect = 0.17
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 178 DFCAVCLERPCT-VAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVPCPLCRHGI 233
D C +CLE PCT + C H +C++C C N SE CP CR +
Sbjct: 150 DECGICLE-PCTKIVLPYCCHAMCIKC---YCKW-NRKSE--------SCPFCRSSL 281
>BP044757
Length = 418
Score = 31.6 bits (70), Expect = 0.22
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 86 LHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVARM 124
L YAA G +C +LL GA N +G P+DVA++
Sbjct: 396 LPYAAGYGRKECVALLLENGAAVTLPNMDGETPIDVAKL 280
>TC17692 weakly similar to UP|Q8LLW2 (Q8LLW2) Receptor-like kinase
Xa21-binding protein 3, partial (19%)
Length = 482
Score = 31.6 bits (70), Expect = 0.22
Identities = 22/65 (33%), Positives = 29/65 (43%)
Frame = +3
Query: 41 TALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQI 100
+ALH+AA NG + + LLD + N L TPL AA G + C +
Sbjct: 318 SALHIAAANGQIEILSRLLDGSVNPDI----------LNRQKQTPLMLAAMHGRVACVEK 467
Query: 101 LLSKG 105
LL G
Sbjct: 468 LLEAG 482
>TC12446 similar to PIR|T51854|T51854 RING-H2 finger protein RHF2a
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 550
Score = 30.8 bits (68), Expect = 0.38
Identities = 17/55 (30%), Positives = 22/55 (39%), Gaps = 3/55 (5%)
Frame = +2
Query: 178 DFCAVCLERPCTV---AAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVPCPLC 229
D C++CLE C GC HE ++C L C S CP+C
Sbjct: 197 DACSICLEDLCDSEPSTVTGCKHEFHLQCILEWCQR------------SSQCPMC 325
>TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper
protein 57, partial (51%)
Length = 1629
Score = 30.4 bits (67), Expect = 0.50
Identities = 27/95 (28%), Positives = 39/95 (40%), Gaps = 6/95 (6%)
Frame = +3
Query: 266 IDQSSFSHNTSEIRKNRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFE-----PG 320
I+ +S S + + K ASVS+ LCP P+P + P + PC + P
Sbjct: 72 INPTSLSSSPNSTHKTATASVSASALCPF--PPYPPLLDP---PSSPPCSAYSE*WVCPA 236
Query: 321 EDETQDESPRHSQ-ASTTDQDKMEGPKLVKKTCSN 354
T SPR S AS+ + P K S+
Sbjct: 237 AVPTPPTSPRSSSPASSATSLRSPSPSSFNKAFSD 341
>TC11492
Length = 789
Score = 30.0 bits (66), Expect = 0.65
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Frame = -2
Query: 241 SFQPKENKLHASLSMCTPCIQHPRDIDQSSFSHN----------------TSEIRKNRVA 284
+FQP +K H+ + C P PR+ + N T E R R
Sbjct: 443 TFQPCHSKSHSKIRPCMPTTSFPREATLRDENVNR*L*NTRRGTPSAAT*TLETRTPRSP 264
Query: 285 SVSSEMLCPVT----CTPF--PSVAIPLCTCNDGPCPPFEPGEDETQDESPRHSQAST 336
++ LCP+ C+P+ PS + T + P PP P TQ +P H + T
Sbjct: 263 TL---RLCPIASRTHCSPYTCPSPS----TSSPSPSPPRSPPTAGTQ--TPGHGRNRT 117
>TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
partial (27%)
Length = 423
Score = 30.0 bits (66), Expect = 0.65
Identities = 20/75 (26%), Positives = 31/75 (40%)
Frame = +2
Query: 168 HSPTTSSNEIDFCAVCLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVPCP 227
HS + D C++CL+R C H C C + +VSS+ H CP
Sbjct: 53 HSDRNGLSGFD-CSICLDRVQDPVVTLCGHLYCWPCIYKWLNFHSVSSD-HEEKKEPQCP 226
Query: 228 LCRHGIISFVKLPSF 242
+C+ I +P +
Sbjct: 227 VCKSEISESSLVPLY 271
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,415,975
Number of Sequences: 28460
Number of extensions: 172413
Number of successful extensions: 1133
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of query: 374
length of database: 4,897,600
effective HSP length: 92
effective length of query: 282
effective length of database: 2,279,280
effective search space: 642756960
effective search space used: 642756960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146807.6