BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.4 + phase: 0
(919 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI417841 73 2e-13
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 60 2e-09
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 59 5e-09
AV427422 53 2e-07
TC18698 52 6e-07
BG662087 51 9e-07
BF177840 45 7e-05
TC14718 similar to UP|NCPR_CATRO (Q05001) NADPH--cytochrome P450... 30 2.3
TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase ... 28 5.0
AV778839 28 5.0
TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial ... 28 6.6
AV427921 28 8.6
AU251671 28 8.6
TC17862 28 8.6
>BI417841
Length = 617
Score = 72.8 bits (177), Expect = 2e-13
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Frame = +1
Query: 328 GEGPDPNSKWGLVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 385
G + N L FDG+ N G GAV+ + G + + + TNN AEY I
Sbjct: 109 GRQSNANRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLI 285
Query: 386 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 445
G++ A + +H+++ GDS LV Q++G W+ + + + A+ L + F +++H+
Sbjct: 286 LGLKHAHEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHV 465
Query: 446 PRDENQMADALATLSSMFRVNH 467
PR N AD A L H
Sbjct: 466 PRQYNSEADVQANLGVNLPAGH 531
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 59.7 bits (143), Expect = 2e-09
Identities = 35/96 (36%), Positives = 48/96 (49%), Gaps = 1/96 (1%)
Frame = +2
Query: 701 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNI-KRIVQKMVTTYRDWHE 759
+NG + Q C+ I+ SS PQ NG EAANK I K I +++ W +
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 760 MLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEV 795
LP L Y T +SS TPF YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 58.5 bits (140), Expect = 5e-09
Identities = 29/91 (31%), Positives = 44/91 (47%)
Frame = +2
Query: 381 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKV 440
Y I G++ AI KH+ + GDS LV NQ++G W+ + + A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 441 ELHHIPRDENQMADALATLSSMFRVNHWNDV 471
+++HIPR+ N AD A R +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>AV427422
Length = 417
Score = 53.1 bits (126), Expect = 2e-07
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Frame = +1
Query: 650 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNN 708
S G+ +LV +D +K+ + T +V+A ++ +GVP I++D +
Sbjct: 19 SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198
Query: 709 NVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHG 767
N + L + + S+ Y P+ +G E N+ ++ ++ + + W +P+A +
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378
Query: 768 YRTTVRSSTGATP 780
Y T+ STG TP
Sbjct: 379 YNTSYHVSTGQTP 417
>TC18698
Length = 808
Score = 51.6 bits (122), Expect = 6e-07
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = -2
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 45
MP GL N TYQR M +FH I K VEVYV+DMIVKS+ E H
Sbjct: 756 MPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*FH 622
>BG662087
Length = 373
Score = 50.8 bits (120), Expect = 9e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQH 45
+PFGL NAGATYQ M +F D + + +EVY+D+MIVKS H
Sbjct: 238 IPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BF177840
Length = 410
Score = 44.7 bits (104), Expect = 7e-05
Identities = 25/101 (24%), Positives = 48/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 696 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVT-TY 754
+ I++D T ++ + L + + S+ PQ +G E NK + +++ ++
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 755 RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEV 795
+ W LP+ Y V S+T +PF VYG + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>TC14718 similar to UP|NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase
(CPR) (P450R) , partial (36%)
Length = 1163
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 506 YHDIKQFLLSREYPPGASNK 525
YHD + F++SRE+ G SNK
Sbjct: 342 YHDYRHFIISREFKIGLSNK 283
>TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase , partial
(37%)
Length = 610
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Frame = -1
Query: 681 AKFIRNNIICRYGVPSKIITDNG-----TNLNNNVVQALCEEFKIEHHNSSPYR 729
AK IR+ + VP ++ITD+ ++++ + E + HH+ P+R
Sbjct: 412 AKVIRSQSLSPTAVPGRMITDSSFASLKEKSMSSLISSSSEXIQFHHHSHGPFR 251
>AV778839
Length = 538
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Frame = -3
Query: 468 WNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQFLLS--REYPPGA 522
WN PI + R S + D+ID +N++DN +KQ +S +E P GA
Sbjct: 524 WNPCPIGMLPRAVGSSGCLPVLDIIDYVKQNLIDN------VKQNPVSERKEMPHGA 372
>TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial (25%)
Length = 562
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 684 IRNNIICRYGVPSKIITDNGTNLNNN----VVQALCEEFKIEHHN 724
+ N I +YG P +IT+NG + NN + AL +E +I ++N
Sbjct: 76 LMNYIKQKYGNPLVVITENGMDDPNNPFISIKDALKDEKRIRYYN 210
>AV427921
Length = 284
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 725 SSPYRPQMNGVVEAANKNIKRIVQKMVT 752
++ Y PQ NGV E N+ I +V+ ++T
Sbjct: 10 TAAYTPQQNGVSERKNRTILNMVRSLLT 93
>AU251671
Length = 396
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 28 VEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPDKCTFGVRSGKLLGFIVSQKGI 87
+ +Y+DDM S E +V+++T+ +KC+FGV S + +++ G+
Sbjct: 230 IHLYIDDMNKFSEANETYVKFITQ--------------EKCSFGVPSRSTVEMPLAEMGL 367
>TC17862
Length = 545
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/63 (26%), Positives = 29/63 (45%)
Frame = +2
Query: 214 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLS 273
E YTM + C L +++ +L+ H WL+ P ++I VT W+M S
Sbjct: 23 EDDYTMKRRLGCHL-----QVQIHLLRHLLWLLRHFLP*RHIRMMHLVTSCTLLWKM*CS 187
Query: 274 EYD 276
++
Sbjct: 188 SFE 196
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,241,667
Number of Sequences: 28460
Number of extensions: 233795
Number of successful extensions: 1070
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of query: 919
length of database: 4,897,600
effective HSP length: 99
effective length of query: 820
effective length of database: 2,080,060
effective search space: 1705649200
effective search space used: 1705649200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146807.4