BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.3 - phase: 0 /pseudo
(1604 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 224 4e-63
BP084332 182 1e-45
AV780009 129 3e-30
BP075943 76 4e-14
BP057233 66 5e-11
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 65 6e-11
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 55 2e-10
AV766665 61 2e-09
BP043850 59 6e-09
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 59 8e-09
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 58 1e-08
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 43 1e-08
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 52 6e-07
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 52 1e-06
AV424544 49 5e-06
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 34 2e-04
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 27 0.021
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 37 0.032
AV773507 36 0.054
TC18909 33 0.17
>BP066094
Length = 532
Score = 224 bits (571), Expect(2) = 4e-63
Identities = 106/149 (71%), Positives = 131/149 (87%)
Frame = +2
Query: 1182 ARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKK 1241
++ EAIRLL+S+++NH IIL+QM+VK AFLNG I EEVYV QPPG ED K+ DH++KLKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1242 SIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNA 1301
S+YGLKQAP+AWY+RLS+FL++N+ RG+VDTTLF +T K DILIVQIYVDDIIFGS N
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1302 SLCKDFSKLMQDEFKMSMMGELKFFLGIQ 1330
SLCK+FS++MQ EF+M MMGELK+FLGIQ
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 36.2 bits (82), Expect(2) = 4e-63
Identities = 17/28 (60%), Positives = 20/28 (70%)
Frame = +3
Query: 1156 RKKARLVAQGYSQQEDIDYTETFAPVAR 1183
+K+ + YSQQ IDYTETFAPVAR
Sbjct: 9 QKQGKASCSRYSQQ*GIDYTETFAPVAR 92
>BP084332
Length = 368
Score = 182 bits (461), Expect(2) = 1e-45
Identities = 86/112 (76%), Positives = 101/112 (89%)
Frame = +2
Query: 1486 QATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHS 1545
Q+TIA+STAEA YISAA C TQ+LWMKHQLEDYQI + IPI+CDNTAAI LSKNPILHS
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 211
Query: 1546 RAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1597
RAKHIE+K+HFIR YVQKG+L ++F+DT+HQWADIFTKPL+ +RF+FI KNL
Sbjct: 212 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
Score = 20.0 bits (40), Expect(2) = 1e-45
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 1471 CQFLGENL 1478
CQFLG NL
Sbjct: 4 CQFLGSNL 27
>AV780009
Length = 529
Score = 129 bits (325), Expect = 3e-30
Identities = 63/163 (38%), Positives = 100/163 (60%), Gaps = 1/163 (0%)
Frame = -1
Query: 1423 AVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWA 1482
A R+ RY+KG GL + KL + D+D+AG R+S +G FLG +LISW
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1483 SKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANI-IPIFCDNTAAICLSKNP 1541
+K+Q T++ S++EA Y + A+ ++ W+ + + ++N + +P+FCDN +A+ ++ NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1542 ILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKP 1584
H R KHIE+ H +R +Q G++ + I T HQ ADIFTKP
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKP 38
>BP075943
Length = 547
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = -3
Query: 1289 IYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1348
+YVDD++ + + + D+F++ +GE K+FLG++I +S G+ ++Q KY +
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1349 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGT-VVDQKLYRGMIGSLLYLTASRPDILFSVC 1407
L+ + +TGT + D YR ++G LLYL +RPDI F+V
Sbjct: 335 LISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFAVN 156
Query: 1408 LCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKS 1444
++F S + H + +YL G+ GL Y S
Sbjct: 155 QLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPAS 45
>BP057233
Length = 473
Score = 65.9 bits (159), Expect = 5e-11
Identities = 31/73 (42%), Positives = 47/73 (63%)
Frame = -2
Query: 1527 IFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLS 1586
++CDN +A L+ NP+LH+R+KHIEI H+IR V + + + ++ T Q AD TKPLS
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPLS 266
Query: 1587 VERFDFIKKNLNM 1599
RF ++ L +
Sbjct: 265 HTRFSQLRDKLGV 227
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 65.5 bits (158), Expect = 6e-11
Identities = 32/91 (35%), Positives = 52/91 (56%), Gaps = 1/91 (1%)
Frame = +1
Query: 1510 WMKHQLEDYQIN-ANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDI 1568
W+ + L+D ++ ++CDN +A ++ NP+ H R KHIEI H +R +QKG++ +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1569 QFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
I + ADI+TK LS + F I L +
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKLGL 276
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 55.1 bits (131), Expect(2) = 2e-10
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Frame = -1
Query: 1342 QTKYTKELLKKFKLEDCKVMNTPM-HPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRP 1400
Q Y ++LKKFK+ + K ++T + + + G VD Y+ +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1401 DILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYR-----KSLDYKLIGFCDA 1455
DI+ V L +RF + + H +R RY+KGT G+ SLD +++
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGIFMLVITM*NSLDTQIV----- 398
Query: 1456 DYAGDRIERKSTSGNCQFLGENLISWAS 1483
+ G LG ISW+S
Sbjct: 397 ----------TRPGYAFHLGRGAISWSS 344
Score = 28.9 bits (63), Expect(2) = 2e-10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 1486 QATIAMSTAEA*YISAASCCTQLLWMKHQLE 1516
Q+ +A+ EA*YI+A SC TQ + + LE
Sbjct: 342 QSVVALYANEA*YIAAESCATQAI*LTRILE 250
>AV766665
Length = 601
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/75 (44%), Positives = 43/75 (57%)
Frame = +3
Query: 1422 TAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISW 1481
T RIF YLK + G L++K + GF ADY G ++R ST G FL NL++W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1482 ASKRQATIAMSTAEA 1496
SK+Q IA S+ EA
Sbjct: 540 RSKQQNIIARSSGEA 584
>BP043850
Length = 515
Score = 58.9 bits (141), Expect = 6e-09
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = -1
Query: 1506 TQLLWMKHQLEDYQ-INANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKG 1564
++++W++ L + + + P+ DNT+AI ++ NP+ H +HIE+ H +R +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1565 ILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1597
++ + + T Q ADI TK L+ +R +F+ L
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKL 237
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 58.5 bits (140), Expect = 8e-09
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Frame = +2
Query: 1259 NFLIKNDFERGQVD-TTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKM 1317
+F++ + R D T +R D +I+ +YVDD++ N ++ + EF M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1318 SMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKED 1375
+G LG+QI++ ++ +++ Q Y +++L++F ++DC ++TP+ LS
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1376 TGTVVDQKL------YRGMIGSLLY 1394
+ +++ Y +GSL+Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/81 (35%), Positives = 49/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 1507 QLLWMKHQLEDYQI-NANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGI 1565
+ LW+ + L D +I + ++ I+CDN +A+ L+ N + H R ++IEI H + V GI
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1566 LDIQFIDTEHQWADIFTKPLS 1586
L + + + Q AD+FTK +S
Sbjct: 201 LHLLHVPSSDQVADVFTKTIS 263
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 43.1 bits (100), Expect(2) = 1e-08
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +3
Query: 1549 HIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
+IE K+HF+R V KG + ++ T+ Q ADI TK L ERF ++ LN+
Sbjct: 69 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 221
Score = 34.3 bits (77), Expect(2) = 1e-08
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 1530 DNTAAICLSKNPILHSRAKHIE 1551
DN +AI L+KNP+ H R+KHIE
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHIE 70
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 52.4 bits (124), Expect = 6e-07
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Frame = +3
Query: 1479 ISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFC---DNTAAI 1535
++W S+ Q +A+STAEA +I+A C +LLWMK+ L++ +++ PI C A
Sbjct: 27 VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQNAWFHSH--PILCCIVITKALF 200
Query: 1536 CLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFD 1591
L++ + + +R + +L+++ I T+ AD+ TK L E+ +
Sbjct: 201 TLARILLFIQDPSTLMFVIIGLRDVLNSKLLELEKIHTDDDGADMMTKSLPREKLE 368
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +1
Query: 1507 QLLWMKHQLEDYQINANIIP--IFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKG 1564
+L W+ + L+D ++ I P ++CD+ +A ++ N + H R KH++I H +R +Q
Sbjct: 4 EL*WLTYILQDLRVPF-ISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1565 ILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
+ + I + Q ADI TKPL F + L +
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGV 285
>AV424544
Length = 276
Score = 49.3 bits (116), Expect = 5e-06
Identities = 23/90 (25%), Positives = 50/90 (55%)
Frame = +3
Query: 1256 RLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEF 1315
+LS++L + + D +LF + ++ +YVDD+I + + + + +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1316 KMSMMGELKFFLGIQINQSKEGVYVHQTKY 1345
++ +G LK+FLG+++ +S G+++ Q KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 34.3 bits (77), Expect(2) = 2e-04
Identities = 23/67 (34%), Positives = 37/67 (54%), Gaps = 3/67 (4%)
Frame = -2
Query: 1520 INANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFI---RYYVQKGILDIQFIDTEHQ 1576
++ ++I DN AA+ + K RAKHIEI HF+ R Y+ + +F+++ Q
Sbjct: 384 VDVSLITHT*DNKAALHMPKI*F-SMRAKHIEIDFHFL*DRRLYLD---ISTRFVNSNDQ 217
Query: 1577 WADIFTK 1583
D+FTK
Sbjct: 216 LTDVFTK 196
Score = 28.5 bits (62), Expect(2) = 2e-04
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = -1
Query: 1474 LGENLISWASKRQATIAMSTAEA 1496
L +NLISW SK +A S AEA
Sbjct: 517 LSDNLISWKSKETIIVARSRAEA 449
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(20%)
Length = 479
Score = 26.6 bits (57), Expect(3) = 0.021
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +3
Query: 1525 IPIFCDNTAAICLSKNP 1541
+P++CDN AA+ +S NP
Sbjct: 51 MPLWCDNQAALHISSNP 101
Score = 25.4 bits (54), Expect(3) = 0.021
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 1555 HFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1597
+F+R + + ++ ++ T D+FTK L+ R DFI L
Sbjct: 151 YFVRNF-NRTLISTSYVRTATHLPDVFTKALNGVRNDFICNQL 276
Score = 22.3 bits (46), Expect(3) = 0.021
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = +2
Query: 1543 LHSRAKHIEIKHH 1555
LH R KHIE+ H
Sbjct: 110 LHERTKHIEVDCH 148
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 36.6 bits (83), Expect = 0.032
Identities = 16/45 (35%), Positives = 29/45 (63%), Gaps = 8/45 (17%)
Frame = +2
Query: 152 KKFLSKRGSYKNS--KKEDQKG------CFNCKKPGHFIADCPDL 188
+K S R SY+++ +++ ++G C NCK+PGHF +CP++
Sbjct: 260 RKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHFARECPNV 394
Score = 31.2 bits (69), Expect = 1.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 172 CFNCKKPGHFIADCPD 187
C+NCK+PGH + CP+
Sbjct: 458 CWNCKEPGHMASSCPN 505
>AV773507
Length = 496
Score = 35.8 bits (81), Expect = 0.054
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = +2
Query: 158 RGSYKNSKKEDQKGCFNCKKPGHFIADCP 186
RGSY + Q CF C +PGH DCP
Sbjct: 308 RGSYGAGDRVGQDDCFECGRPGHRARDCP 394
>TC18909
Length = 621
Score = 33.1 bits (74), Expect = 0.35
Identities = 31/93 (33%), Positives = 42/93 (44%), Gaps = 9/93 (9%)
Frame = +2
Query: 1384 LYRGMIGSLLYLTASR--------PDILFSVCLCARFQSDSRESHLTAVKRIFRYL-KGT 1434
+Y G I +LLYL + P I FSV F S+S E H TA K I K
Sbjct: 260 IYCGPIITLLYLQPAEEDPDPLTSPQISFSVNKVC*FLSESLEEHGTAGKCILNVT*KAL 439
Query: 1435 TNLGLLYRKSLDYKLIGFCDADYAGDRIERKST 1467
+G + + F DAD+A + +R+ST
Sbjct: 440 *TMGFFIQTNFP----AFSDADWASNVDDRRST 526
Score = 29.3 bits (64), Expect(2) = 0.17
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 1173 DYTETFAPVARLEAIRLLLSYAI 1195
DYTET +PV + +R+LLS A+
Sbjct: 62 DYTETVSPVVKPVTVRILLSLAV 130
Score = 23.5 bits (49), Expect(2) = 0.17
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +1
Query: 1152 GEVTRKKARLVAQGYSQ 1168
G + + KARLVA+G+ Q
Sbjct: 1 GSINKYKARLVAKGFHQ 51
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,178,942
Number of Sequences: 28460
Number of extensions: 340926
Number of successful extensions: 3032
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3021
length of query: 1604
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1501
effective length of database: 1,966,220
effective search space: 2951296220
effective search space used: 2951296220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146807.3