TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146807.10 - phase: 0 
         (234 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV776879                                                               28  1.4
TC10619 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p...    28  1.4
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,...    28  1.4
BP050750                                                               27  3.1
AV767377                                                               27  3.1
AV767333                                                               27  4.0
NP459574 NADH dehydrogenase ND6 [Lotus japonicus]                      26  5.2
AV773315                                                               26  5.2
BP073599                                                               26  5.2
TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-relat...    25  8.9
BP068291                                                               25  8.9

>AV776879 
          Length = 201

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 18/52 (34%), Positives = 23/52 (43%)
 Frame = +2

Query: 103 RGGINYNPELAMRQFGFPMKAKPINLATSPEFFYYSNAPTGQREAFIGAWSK 154
           RGG+NYN EL  R  G P  A  + L          N P  Q    +G W++
Sbjct: 41  RGGLNYNMEL--RWEGVPSVADALRLLKEQA----DNTPAPQWVRVVGGWTE 178


>TC10619 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial
           (24%)
          Length = 571

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 16/36 (44%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
 Frame = +1

Query: 166 RSGIAHEAYTQWNLMLKKELVKVRRELEE--KDELL 199
           + G+AH  +TQ N  L  ELV V RE  +   D+LL
Sbjct: 73  KKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 180


>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
          (74%)
          Length = 1591

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 27 RTLKG-RGYILCCVPLLYRWFISHLP 51
          R LK  RG++ CC    + WF+S LP
Sbjct: 42 RVLKSKRGFLCCCCWEFFSWFLSPLP 119


>BP050750 
          Length = 503

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 22/48 (45%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
 Frame = -1

Query: 123 AKPINLATSPEFFYYSNAPTG-QREAFIGAWSKVCRKSVKHLGVRSGI 169
           AKPI  A   +FFYY +AP+G   E+FIGA        V+ + VR GI
Sbjct: 278 AKPI--ACLSKFFYY-DAPSGCCDESFIGAVKSSSLGFVRGMVVRIGI 144


>AV767377 
          Length = 444

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 138 SNAPTGQREAFIGAWSKVCRKSVKHLGV 165
           S+ P+G    F+ +W+K+C   +K L +
Sbjct: 372 SSHPSGGYMCFVPSWTKLCESKIKKLWI 289


>AV767333 
          Length = 490

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = +1

Query: 195 KDELLMRDSKRARGRCNFYARYCGSDSESES 225
           KDE ++ + KR    CNF+ R C +  E ES
Sbjct: 37  KDEFVLPNMKRT*LGCNFF*RKCINKKEIES 129


>NP459574 NADH dehydrogenase ND6 [Lotus japonicus]
          Length = 531

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 47  ISHLPSSFHDNSENWSYSQRIMALTPNEV-VWITPT 81
           I  +PS      ++W YS+  M +TPN +  +I PT
Sbjct: 305 IKVIPSPTVQRRKSW*YSEPFMNITPNMIKTFIAPT 198


>AV773315 
          Length = 519

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 181 LKKELVKVRRELEEKDELLMRDSKRARGRCNFYARYCGSDSESES 225
           ++  ++K+   L  K     R   + RGR    ARYC    ESES
Sbjct: 452 IRSRMLKLSLMLPSKLFFYHRSRSKTRGRHRRLARYCDYG*ESES 318


>BP073599 
          Length = 298

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 11 NPVPTLLADTYHAIHDRTLKGR 32
          +PVPTL + T+  I +RTL GR
Sbjct: 7  HPVPTLASVTHFLIKNRTLIGR 72


>TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-related protein
           (Fragment), partial (59%)
          Length = 1111

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (55%)
 Frame = +3

Query: 56  DNSENWSYSQRIMALTPNEVVWITPTAQVKEI 87
           DN  +WS     +AL PN + WI PTA  + I
Sbjct: 228 DNGASWSQLLETLAL-PN-IKWICPTAPTQPI 317


>BP068291 
          Length = 444

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 14/38 (36%), Positives = 23/38 (59%)
 Frame = -3

Query: 12  PVPTLLADTYHAIHDRTLKGRGYILCCVPLLYRWFISH 49
           PVP+  +D  +A+HD+++ GR  I+   PLL  +   H
Sbjct: 382 PVPSSPSD*INALHDQSMFGR--IIITSPLLAGFQFHH 275


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,613,173
Number of Sequences: 28460
Number of extensions: 64984
Number of successful extensions: 351
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of query: 234
length of database: 4,897,600
effective HSP length: 87
effective length of query: 147
effective length of database: 2,421,580
effective search space: 355972260
effective search space used: 355972260
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)