TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146806.1 - phase: 0 
         (790 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV779813                                                              152  3e-37
BP060354                                                              103  8e-23
BP064688                                                               88  5e-18
BP052458                                                               28  0.15
BP062776                                                               32  0.51
TC10678 similar to PIR|T52454|T52454 ATP-dependent Clp proteinas...    29  3.3
TC15009 similar to GB|AAO08581.1|27359642|AE016797 Uncharacteriz...    29  3.3
BP075297                                                               28  4.3
AV777425                                                               28  5.6
TC8843                                                                 27  9.6
AW720261                                                               27  9.6
TC9033 similar to AAP86669 (AAP86669) 26S proteasome subunit RPN...    27  9.6

>AV779813 
          Length = 456

 Score =  152 bits (383), Expect = 3e-37
 Identities = 73/108 (67%), Positives = 87/108 (79%)
 Frame = +1

Query: 6   YRMKKFFPVLSRDKASSSTTDIAPNSTNEGVKVVDYKLLETDPGIRPPISSYHPDIQDEV 65
           Y MKKF  +LSRDKA+SS    A  + +EG+KVVDY+ LETDPGIRPPISSYHPDIQ+EV
Sbjct: 133 YMMKKFLLLLSRDKATSSVNLEASETPSEGIKVVDYEWLETDPGIRPPISSYHPDIQNEV 312

Query: 66  RKAYLKIRRHQPPSNFVYPWSDFRGTRRRFNKNWFNLYDWLEYSESKN 113
           RKAYLKI R QPP N+V PW+     RRRF++NWFNLYD ++YSESK+
Sbjct: 313 RKAYLKIGRDQPPHNWVCPWT*QGNQRRRFSRNWFNLYDGIDYSESKD 456


>BP060354 
          Length = 358

 Score =  103 bits (258), Expect = 8e-23
 Identities = 51/109 (46%), Positives = 76/109 (68%)
 Frame = -2

Query: 679 NYVRNVKSDPKFAKLKGLSDLCAILVETNKCKTFALVFKLLKLALLLPVATASVERVFSA 738
           NY  ++ SD   ++L G SDL   +VET K   + +V+ L++LAL+L VATA++ER FSA
Sbjct: 348 NYFMDICSDCALSELSGFSDLAIKVVETRKHIVYPMVYLLIELALILHVATATIERAFSA 169

Query: 739 MKIVKSHLRNKMGDQWLNDRLVTFIERDVLFTISTDVILAHFQQMDDRR 787
           M I ++ ++N+MGD+WLND LVT+IE+DV  ++  + I+  FQ M  RR
Sbjct: 168 MNINQNRMQNRMGDEWLNDCLVTYIEKDVFDSVENEKIVPSFQNMKTRR 22


>BP064688 
          Length = 484

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 41/112 (36%), Positives = 71/112 (62%)
 Frame = -3

Query: 679 NYVRNVKSDPKFAKLKGLSDLCAILVETNKCKTFALVFKLLKLALLLPVATASVERVFSA 738
           +++ + + +     L  + +LC  L  T K + + L+ +LL+L + LPV+TA+ ER FSA
Sbjct: 449 HFIVDARQESSLQNLSTIQELCTCLASTKKSEVYYLIDRLLRLVMTLPVSTATTERSFSA 270

Query: 739 MKIVKSHLRNKMGDQWLNDRLVTFIERDVLFTISTDVILAHFQQMDDRRFSL 790
           MKI+K+ LRNKM   +L D ++  IER++  + S+D I+  F+ + +RR +L
Sbjct: 269 MKIIKTKLRNKMEADFLADSMIVHIEREIATSFSSDSIIDEFKSLKERRAAL 114


>BP052458 
          Length = 291

 Score = 28.1 bits (61), Expect(2) = 0.15
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = -2

Query: 733 ERVFSAMKIVKSHLRNKMGDQ 753
           + +F  MKI+KS LRNK+ D+
Sbjct: 290 KELFQQMKIIKSKLRNKINDE 228



 Score = 23.9 bits (50), Expect(2) = 0.15
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 755 LNDRLVTFIERDVLFTISTDVILAHFQQMDDRRFSL 790
           +ND ++ +IER++  +++   IL  F     RR  L
Sbjct: 225 INDLMICYIEREIFKSLNDVDILRTFAAKRTRRMHL 118


>BP062776 
          Length = 493

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 564 ISRVVTICTKHEIDVPDMDAPYMEGKKPRRVPPVSSVSNLHHYK 607
           I   +T C  H ++V DM APY  G   R   P   +   HHY+
Sbjct: 142 IEDAITFCDAHHVEVLDMKAPYFMG-NGRHKKPDGDIK--HHYR 20


>TC10678 similar to PIR|T52454|T52454 ATP-dependent Clp proteinase
           catalytic chain                P2 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (37%)
          Length = 516

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/54 (29%), Positives = 23/54 (41%)
 Frame = +3

Query: 583 APYMEGKKPRRVPPVSSVSNLHHYKNDCLFSVLDLQLQELNARFDEENTELLQC 636
           APY  G  PR  PP S  + ++        S     +  +NA F  +  + LQC
Sbjct: 69  APYTTGSAPRLCPPSSCATKIYTGLKPQSASPFGAAIPNVNAEFYAKVDKTLQC 230


>TC15009 similar to GB|AAO08581.1|27359642|AE016797 Uncharacterized
           conserved protein {Vibrio vulnificus CMCP6;} , partial
           (13%)
          Length = 913

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 390 ALVACAKTHKPVSGFFGKVNML 411
           A V CA+ HKP+SG+F K  +L
Sbjct: 83  AAVNCARFHKPMSGWFAKQYLL 18


>BP075297 
          Length = 195

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 159 VDCVHMGYALMNPNQSIKAAFVNQTKQMNVEYCVRVKTSLLATKYLLR 206
           +DC+H    ++  +  + AAF N T      Y + V T +L T Y  R
Sbjct: 17  LDCLHKTPNMIKSDAGVVAAFYNLTAHTTPPYHILV*TQVLETWYKYR 160


>AV777425 
          Length = 575

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 67  KAYLKIRRHQPPSNF------VYPWSDFRGTRRRFNKNWFNLYDWL 106
           K YL    H P  +       +YP+  +  + R+F ++W N + WL
Sbjct: 230 KGYLYRSEHLPQQSLPL*ILKIYPYWCYSQSERQFEQHWNNAF*WL 367


>TC8843 
          Length = 710

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +1

Query: 85  WSDFR-GTRRRFNKNWFNLYDWLEYSE----SKNLAFCLPCFLF 123
           W  FR   RRR +   + +  W  +      S N+ FCLPC LF
Sbjct: 160 WVRFRIRIRRRDHAGRWVISSWFSHGRFPKNSFNICFCLPCQLF 291


>AW720261 
          Length = 515

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = -3

Query: 723 LLLPVATASVERVFSAMKIVKSHLRNKMGDQWLNDRLV 760
           L+LP   A         K  + H RN+  +QWL+DR +
Sbjct: 447 LVLPQHVAHHHSEHHHQKTRRPHFRNRRWNQWLHDRRI 334


>TC9033 similar to AAP86669 (AAP86669) 26S proteasome subunit RPN9b,
           partial (48%)
          Length = 1004

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 167 ALMNPNQSIKAAFVNQTKQMNVEYC---VRVKTSLLA 200
           A ++ NQS K+++ NQ K + + YC   + V +S +A
Sbjct: 747 AALSSNQSFKSSWQNQMKHIKLAYCPCDLEVSSSFVA 637


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,800,140
Number of Sequences: 28460
Number of extensions: 172854
Number of successful extensions: 872
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of query: 790
length of database: 4,897,600
effective HSP length: 98
effective length of query: 692
effective length of database: 2,108,520
effective search space: 1459095840
effective search space used: 1459095840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)