TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146805.1 - phase: 0 /pseudo
         (1445 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                               91  1e-18
BE122516                                                               85  7e-17
AV410603                                                               72  8e-13
AU089582                                                               50  1e-08
TC18698                                                                44  2e-04
TC12574                                                                37  0.017
AV779679                                                               34  0.19
TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)      30  3.5
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        29  4.6
TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase,...    29  4.6
TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18...    28  7.9

>BG662087 
          Length = 373

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 45/119 (37%), Positives = 67/119 (55%)
 Frame = +1

Query: 560 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQK 619
           G  R+ +DY  LNK   K+ YPLP ID L+D      + S +D  SGYHQIK+   D  K
Sbjct: 16  GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195

Query: 620 TALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEH 678
           TA  T   +Y Y+ +PFG+ NA   +   M+R+F   + R + V++D++++ S     H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>BE122516 
          Length = 364

 Score = 85.1 bits (209), Expect = 7e-17
 Identities = 44/116 (37%), Positives = 72/116 (61%)
 Frame = +2

Query: 411 LGMNWLEYKHVHINCFSKSVYFSSAEEECGAEFLSTKQLKQMERDGILMFSLMASLSIEN 470
           +GMNWL      +NC  K+V F ++E +      + K  K  E +  ++   + +   ++
Sbjct: 14  VGMNWLTANDATLNCRKKTVTFGTSEGDAKRVKRTDKVGKASECESDVLLGALET--DKS 187

Query: 471 QAVIDKLQVVCDFPEVYPDEIPDVPPEREVEFSINLVPGTKPVSMAPYRMSASELS 526
              ++ + VV +F +V+P+E+ ++PPEREVEFSI+ VPGT P+S+APYRMS  EL+
Sbjct: 188 DTGVEGIPVVREFSDVFPEEVSELPPEREVEFSID*VPGTGPISIAPYRMSLVELA 355


>AV410603 
          Length = 162

 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 30/53 (56%), Positives = 42/53 (78%)
 Frame = +1

Query: 575 TIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYG 627
           T+K+ +P+P +D+L+D+L G++ FSK+DLRSGYHQI VK ED  KT  RT +G
Sbjct: 4   TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162


>AU089582 
          Length = 383

 Score = 50.1 bits (118), Expect(2) = 1e-08
 Identities = 30/83 (36%), Positives = 42/83 (50%)
 Frame = +1

Query: 1133 CCPVGGDLH*GDCEVAWYSFEHCIG*RSKIYF*ILEKFARGFGFEVEIEFGLSSTDRWSV 1192
            C  +  DL   DC +AW +  +    RS I+   LE F+  FG  ++ E+  SS++ WSV
Sbjct: 10   CVSIC*DLLG*DCFLAWCTCVYNFRSRSSIHITFLEVFSNCFGNSIKNEYRFSSSN*WSV 189

Query: 1193 GEDNSVARGFVESLCA*ARRNLG 1215
             ED S  RG+   LC    R  G
Sbjct: 190  REDYSDLRGYASCLCVXPERXAG 258



 Score = 27.3 bits (59), Expect(2) = 1e-08
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +2

Query: 1211 RRNLG*SSSVDRVHIQ**LSF*YWNGTF*GFVWSEMQNSVVLV 1253
            R  LG     D + I **LS *+ +GT *  VW EMQ +  LV
Sbjct: 245  RGXLGSVFVFDGIRI***LSV*HLDGTI*SLVW*EMQVTYRLV 373


>TC18698 
          Length = 808

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 36/61 (58%)
 Frame = -2

Query: 618 QKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEE 677
           +KT L+    +Y Y+VMP G+ N    +   M++IFH  + + V V+++D+++ S  E  
Sbjct: 804 KKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE*F 625

Query: 678 H 678
           H
Sbjct: 624 H 622


>TC12574 
          Length = 325

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 645 FMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEE 677
           F   +N IF +F + F++VFI+DIL Y++ +EE
Sbjct: 2   FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100


>AV779679 
          Length = 440

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 561 SMRLCIDYRQLNKVTIKNRYPLPRIDDLMD 590
           +M+LC DY QL+ VTI N+  LP +D+  D
Sbjct: 345 TMQLCDDYMQLDYVTIPNKSLLPHLDEWSD 434


>TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)
          Length = 547

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -3

Query: 334 SFSCYYYTSATHCFIAFDCVS-----ALGLDLSDMS*EMVVETPAKGSVTTSLVCLRCPL 388
           SF C+  TSA  CF+A  C S     AL   L+D+         A G+  ++LV      
Sbjct: 251 SFFCFAATSAIFCFLALTCFSTSSSAALLAFLADLG------AAATGAAASTLVA----- 105

Query: 389 SMFGRDFEMDLVCLPLSG 406
                DF +DL  L  SG
Sbjct: 104 -----DFLLDLGILTRSG 66


>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/59 (28%), Positives = 29/59 (48%)
 Frame = +2

Query: 1324 EVDPEVYWSVSDIRKSWNGGLSSGFTTASFKFARRFPCVATSEVCSGSISCDPE*RCAS 1382
            + + +V+W+V  +R+ W   LS G +  SF  +  F C   +E+   S S    * C +
Sbjct: 47   KTESKVHWTV*GVREGWLCILSFGTSARSFCSSSGFSCFYAAEIPI*SFSRYSS*GCTA 223


>TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase, partial
           (14%)
          Length = 637

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 658 DRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSK-CEFWLKEVSFLGHVIS 716
           ++ +  F  D++   + EEE  E  K      KEK+   ++ K C FW+  +S +  +  
Sbjct: 123 EKVLTEFFCDVMCQKQQEEEQGEGDKAASPAEKEKEKSVQV*KNCVFWVTRISSVDPIAG 302

Query: 717 G 717
           G
Sbjct: 303 G 305


>TC17915 similar to GB|AAM10415.1|20147411|AY093799 AT3g05640/F18C1_9
           {Arabidopsis thaliana;}, partial (37%)
          Length = 506

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +2

Query: 596 RVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHA 655
           RVF  +D   G H++ + DE+    A+   +G  +Y V  +G+ + P V    +      
Sbjct: 26  RVFC-LDDEPGVHRVCLPDEESPGLAMSRAFG--DYCVKEYGLISVPEVTQRNITS---- 184

Query: 656 FLDRFVVVFIDDILIYSKTEE 676
             D+FVV+  D +      EE
Sbjct: 185 -KDQFVVLATDGVWDVISNEE 244


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.360    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,051,729
Number of Sequences: 28460
Number of extensions: 349615
Number of successful extensions: 3340
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 2593
length of query: 1445
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1343
effective length of database: 1,994,680
effective search space: 2678855240
effective search space used: 2678855240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)