BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146794.6 + phase: 0
(1018 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 64 9e-11
AV427333 39 0.005
TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellu... 36 0.035
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 35 0.046
AU251550 35 0.079
TC12396 similar to UP|Q940Z6 (Q940Z6) At1g12810/F13K23_4, partia... 34 0.13
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 34 0.13
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 33 0.23
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 33 0.23
TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transc... 33 0.30
TC10164 weakly similar to UP|O24099 (O24099) MtN12 protein (Frag... 33 0.30
BP041664 32 0.39
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 32 0.39
TC15267 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Ce... 32 0.39
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 32 0.39
TC15072 32 0.51
BG662122 32 0.51
BP043392 32 0.51
TC11304 similar to PIR|T04669|T04669 serine O-acetyltransferase ... 32 0.67
TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5... 32 0.67
>BP065719
Length = 567
Score = 64.3 bits (155), Expect = 9e-11
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Frame = +3
Query: 88 RHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQN--HIIKYVRKMGN 145
+H N F + + V + ++P+ +K+P F +++G + HI +Y + G+
Sbjct: 84 QHGFNVGFANRPHFVSAFIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGD 263
Query: 146 YKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLR 205
N++L + F SL ++A W+T+L+ +HT+ +L F + F K + + L
Sbjct: 264 LAINENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQF-FRGECKVSXKDLA 440
Query: 206 SLSQKKEESFREYAQRWRGAAARITPALDEEEM 238
S+ +K ES +Y R+R +R + E E+
Sbjct: 441 SVKRKPAESIDDYLNRFRMLKSRCFTHVSEHEL 539
>AV427333
Length = 387
Score = 38.5 bits (88), Expect = 0.005
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Frame = +3
Query: 331 PPSYPYAPYS--QHPFFPP----FYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQ 384
PPS+PY P + HPF PP Y + P PP P P
Sbjct: 87 PPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAP-----PPRGHPSPPPSSPPPPS 251
Query: 385 ARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPP 423
+ P PP P + P H +PPP PLPP
Sbjct: 252 SHPFTPPPPHVRPPPSP---HHPITPPPHVRPPPPPLPP 359
>TC12375 weakly similar to GB|AAA59989.1|189479|HUMP53T p53 cellular tumor
antigen {Homo sapiens;} , partial (6%)
Length = 468
Score = 35.8 bits (81), Expect = 0.035
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = +2
Query: 339 YSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQ 384
+S H +F P + Q PL + P+N Q++Q LP+ Q QH Q
Sbjct: 89 FSSHSYFLPQFFQSPL*LNRLLQPLNRQQNQLQQNLPLPHQLQHHQ 226
Score = 31.6 bits (70), Expect = 0.67
Identities = 32/101 (31%), Positives = 46/101 (44%), Gaps = 4/101 (3%)
Frame = +1
Query: 9 LPPFFTPSTAAGTSGTANNGPI-PATNVVSINTTLPQTTAAVTEPLVHAIPQSVNIN-TH 66
L P F+ +T A + A P PA S T P A ++PLV A+PQS +N
Sbjct: 109 LAPIFSITTLAQSPAAAPKPPAKPAPTKPSPATPAP----APSKPLVPALPQSPMVNPDS 276
Query: 67 HGNIPVIKTME--ERMEELAKELRHEIKANQGNADSFKTQD 105
GN V+K + + L + L+ NQ NA T++
Sbjct: 277 SGNQDVVKILRKAKSFNTLIRLLKTTQIINQVNAQLVATKN 399
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 35.4 bits (80), Expect = 0.046
Identities = 29/102 (28%), Positives = 34/102 (32%)
Frame = +1
Query: 323 APINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQH 382
AP + P YP PY QH F+PP P PP P P +
Sbjct: 172 APPYGMEFSP-YPSLPYPQHQFYPPPMAPPPPPPPAPAPPA---------------PPPY 303
Query: 383 QQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPR 424
A P P P L+ LP PP P PP+
Sbjct: 304 WAAPPPRPYGPPLFTSTLP-------------PRPPKPAPPK 390
>AU251550
Length = 329
Score = 34.7 bits (78), Expect = 0.079
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPP-GQPQVPVNAIAQQ 369
PP P PY+ P PPF H +P PP G P P A+ Q
Sbjct: 140 PPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQ 259
>TC12396 similar to UP|Q940Z6 (Q940Z6) At1g12810/F13K23_4, partial (39%)
Length = 408
Score = 33.9 bits (76), Expect = 0.13
Identities = 32/127 (25%), Positives = 47/127 (36%), Gaps = 5/127 (3%)
Frame = +3
Query: 324 PINAAQMPPS---YPYAPYSQHPFFPP--FYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQ 378
P A+Q+P + Y AP +P +PP + YP P G P + Q
Sbjct: 21 PRAASQIPQTMSNYQRAPQEPYPDYPPPGYGSPYPPPQGYP------VTQPPPGYPSAPP 182
Query: 379 QQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGAL 438
++ P PP+ YA ++G+ + PP P PP + H
Sbjct: 183 PPGYEGYPPPPPPVYAGYAARPQYEGYQGYFNQGYPQQPPPPPPPGYHC-----HHDQHH 347
Query: 439 GHDVEGC 445
HD GC
Sbjct: 348 HHDSPGC 368
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/91 (27%), Positives = 42/91 (45%), Gaps = 3/91 (3%)
Frame = +3
Query: 326 NAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQA 385
N + S+ P+S H PP PLP + Q+ ++ +A+ Q+ P +++ +
Sbjct: 30 NGSSFFTSHILLPHSHH-HHPPHTFTCPLPNPRQQLQIHRLARHPAQRRPPSPRRRRLRP 206
Query: 386 RPTFPPI-PMLYAELLPTLL--HRGHCTTRQ 413
+P PP+ P L+ L HR H RQ
Sbjct: 207 QPLHPPLHPRPRHSLVRPRLGPHRLHLRRRQ 299
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 33.1 bits (74), Expect = 0.23
Identities = 29/104 (27%), Positives = 35/104 (32%), Gaps = 2/104 (1%)
Frame = +1
Query: 324 PINAAQMPPSYP--YAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQ 381
P PP +P + P S P P + P PP P +P P Q
Sbjct: 547 PFQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSPP--PFIPN-----------PFQPPPS 687
Query: 382 HQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRF 425
Q P FP P++ L P PPP P PP F
Sbjct: 688 KQPPSPLFPFPPIVIPGLTP--------------PPPPPPPPPF 777
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +1
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPPGQPQV 361
PP P P PFFPPF +P PPG+P +
Sbjct: 748 PPPPPPPP----PFFPPFPPLFP-PPGRPPI 825
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 33.1 bits (74), Expect = 0.23
Identities = 28/101 (27%), Positives = 35/101 (33%)
Frame = -1
Query: 324 PINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQ 383
P+ + PPS PY P + P PP YP PP P P + P +
Sbjct: 527 PLP*REPPPSPPYPPSRRPP*PPPPPPPYPPPP--PP*P--------RDPPPPPYPPSRR 378
Query: 384 QARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPR 424
P +PP P +PPP P PPR
Sbjct: 377 PPPPPYPPPP---------------------RPPPPPPPPR 318
>TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transcription
factor PosF21 (AtbZIP59), partial (17%)
Length = 570
Score = 32.7 bits (73), Expect = 0.30
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +1
Query: 350 HQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQA 385
HQ+ P Q Q QQ +QQ+ QQQ+QHQQ+
Sbjct: 136 HQFQQPIQQQQQQQQQPIQQPQQQMQQQQQEQHQQS 243
>TC10164 weakly similar to UP|O24099 (O24099) MtN12 protein (Fragment),
partial (66%)
Length = 566
Score = 32.7 bits (73), Expect = 0.30
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +3
Query: 324 PINAAQMPPSYPYAPYSQHPFF----PPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQ 379
PI+ + PP Y PY +P F PPF + PP P N +P+
Sbjct: 66 PISHSPPPPGQTYPPYIPNPIFLSPPPPFPISHSPPPPVQTYPPNI-------PIPIDHS 224
Query: 380 QQHQQARPTFPPIPMLYAELLPTLLHRG 407
PP+P+ +A P H G
Sbjct: 225 P---------PPVPINHAPPPPPYHHTG 281
>BP041664
Length = 487
Score = 32.3 bits (72), Expect = 0.39
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +3
Query: 354 LPPGQPQVPVNAIAQQMKQQLPVQQQQQH 382
L P P P I ++M ++PVQQQQQH
Sbjct: 69 LQPHSPPQPPTGIKKKMSTRVPVQQQQQH 155
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 32.3 bits (72), Expect = 0.39
Identities = 25/94 (26%), Positives = 33/94 (34%), Gaps = 2/94 (2%)
Frame = +1
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPPG-QPQVPVNAIAQQMKQQLPVQQQQQHQQARPT- 388
PP P Y + P PP+Y++ P PP P P + P P+
Sbjct: 31 PPPVPKPYYYKSPPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSP 210
Query: 389 FPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLP 422
PP P Y P + PPP P+P
Sbjct: 211 SPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIP 312
Score = 28.9 bits (63), Expect = 4.3
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Frame = +1
Query: 324 PINAAQMPPSYPYA---PYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQ 380
P + PP Y Y P S P PP+++ P PP P I + + +
Sbjct: 340 PPPTSSPPPPYHYVSPPPPSPSPP-PPYHYASPPPPSPSPAP-TYIYKSPPPPVKLPPPP 513
Query: 381 QHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPP-----DPLPPRFR 426
H + P P P PT +++ + PPP P PP ++
Sbjct: 514 YHYTSPPPPSPSP------APTYIYKSPPPPTKSPPPPVYIYASPPPPIYK 648
>TC15267 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein), partial (6%)
Length = 1003
Score = 32.3 bits (72), Expect = 0.39
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Frame = +2
Query: 324 PINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQ 383
P PP + ++ HP P + + P P P + Q Q Q +
Sbjct: 101 PTTTQSTPPP*SFHRHNLHPRHPLLHSRLGFHPRHPPPPHHHHHQATAQTTTTSQLSRLH 280
Query: 384 QARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPP------PDPLPPRFR 426
R L LP LLHR + +PP P PLPPR R
Sbjct: 281 PHR--------LQRHSLPGLLHRRRLLLQ--RPPHRPTIHPHPLPPRLR 397
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 32.3 bits (72), Expect = 0.39
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 359 PQVPVNAIAQQMKQQLPVQQQQQHQQARP--TFPPIPMLYAELLP 401
PQV ++Q +QQLP QQQQ Q +P P + L + LP
Sbjct: 92 PQVQQQQLSQMQQQQLPQLQQQQLSQLQPQQQLPQLQQLQHQQLP 226
>TC15072
Length = 721
Score = 32.0 bits (71), Expect = 0.51
Identities = 21/71 (29%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = +1
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNA--------IAQQMKQQLPVQQQQQH 382
PPSY Y PP+Y+ P PP P PV + + +P
Sbjct: 31 PPSYGY---------PPYYNAVPPPP--PPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ 177
Query: 383 QQARPTFPPIP 393
Q R T PP+P
Sbjct: 178 SQPRATNPPLP 210
>BG662122
Length = 386
Score = 32.0 bits (71), Expect = 0.51
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 408 HCTTRQGKPPPDPLPPRFRSDLK--CDFHQGALGHDVEGCYALKYIVKKLIDQGKL 461
H + G+ P PPR D C++ + + HD++ C+ LK ++KLI G+L
Sbjct: 146 HMVGKSGQS*P---PPRRGIDTTK*CEYRRSVV-HDIDDCFTLKREIEKLIKMGRL 301
>BP043392
Length = 442
Score = 32.0 bits (71), Expect = 0.51
Identities = 21/71 (29%), Positives = 27/71 (37%), Gaps = 8/71 (11%)
Frame = -2
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNA--------IAQQMKQQLPVQQQQQH 382
PPSY Y PP+Y+ P PP P PV + + +P
Sbjct: 414 PPSYGY---------PPYYNAVPPPP--PPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQ 268
Query: 383 QQARPTFPPIP 393
Q R T PP+P
Sbjct: 267 SQPRATNPPLP 235
>TC11304 similar to PIR|T04669|T04669 serine O-acetyltransferase F8D20.150
- Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (24%)
Length = 775
Score = 31.6 bits (70), Expect = 0.67
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Frame = +3
Query: 331 PPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQL-------PVQQQQQHQ 383
PP P ++ P+F P H PP P +P +A+ + L P +++
Sbjct: 270 PPPPPPHHHNSLPYFNPTSHGLCEPPPPPPLPPP*LARSPQHALRRRPPPPPPPKRRS*T 449
Query: 384 QARPTFPPIPMLYAELLPTLLHRGHC----TTRQGKPPPD 419
+ P + + + E LP L H G C TR G+ PD
Sbjct: 450 RPPPPYSRLRLPPRESLPCLRH-GSCRPGTRTRLGRTRPD 566
>TC16331 similar to GB|AAN64534.1|24797044|BT001143 At5g12410/At5g12410
{Arabidopsis thaliana;}, partial (42%)
Length = 932
Score = 31.6 bits (70), Expect = 0.67
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 1/56 (1%)
Frame = -1
Query: 333 SYPYAPYSQ-HPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQARP 387
+YP + + P P F+HQYP Q PV+A QL Q + HQQ P
Sbjct: 167 NYPVSAFRLLSPRLPQFFHQYP-HSHQQNYPVSAFRPHSLPQLFHQYRHAHQQNYP 3
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,326,200
Number of Sequences: 28460
Number of extensions: 259005
Number of successful extensions: 2147
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2099
length of query: 1018
length of database: 4,897,600
effective HSP length: 99
effective length of query: 919
effective length of database: 2,080,060
effective search space: 1911575140
effective search space used: 1911575140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146794.6