TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146794.13 + phase: 0 /pseudo
         (818 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089582                                                               53  3e-08
TC12574                                                                35  0.048
TC10135                                                                28  4.5
TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase,...    28  5.8
BP054462                                                               27  10.0

>AU089582 
          Length = 383

 Score = 53.1 bits (126), Expect(2) = 3e-08
 Identities = 29/69 (42%), Positives = 40/69 (57%)
 Frame = +1

Query: 512 DLYL*YCEAAWCSVEHCVR*RSKVYF*ILEKFARGVGF*VEVEFGLSSANRWSVREDDSV 571
           DL  * C  AWC+  +  R RS ++   LE F+   G  ++ E+  SS+N WSVRED S 
Sbjct: 28  DLLG*DCFLAWCTCVYNFRSRSSIHITFLEVFSNCFGNSIKNEYRFSSSN*WSVREDYSD 207

Query: 572 VRGFVESLC 580
           +RG+   LC
Sbjct: 208 LRGYASCLC 234



 Score = 22.3 bits (46), Expect(2) = 3e-08
 Identities = 16/43 (37%), Positives = 22/43 (50%)
 Frame = +2

Query: 584 RWDLG*SSTVDRVHVQQQLPF*YRNGTIRSFVWSEVQNSVMLV 626
           R  LG     D + +   L  *+ +GTI S VW E+Q +  LV
Sbjct: 245 RGXLGSVFVFDGIRI***LSV*HLDGTI*SLVW*EMQVTYRLV 373


>TC12574 
          Length = 325

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +2

Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEE 51
          F+  +N IF ++ + F++VFI+DIL Y+  +EE
Sbjct: 2  FKNSVNHIFESFFEHFMIVFINDILSYTEDKEE 100


>TC10135 
          Length = 1501

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/74 (29%), Positives = 29/74 (38%)
 Frame = +1

Query: 653  DESVAEST*ELSRQA*ERPWISGS**CVSKSRSCDRCWSCLEIEEVDAEVYWPVSDIRKS 712
            D S+    *+LS Q *   W +    C+    +C   +S L+        YW   DI   
Sbjct: 943  DSSMGYQL*DLSLQV*RGLWRNCIHHCLDFQLNCFTVFSVLDTN------YWDSMDIHDV 1104

Query: 713  WNSGI*SGFATTSF 726
            WN G  S F    F
Sbjct: 1105 WNFGCCSHFLCHCF 1146


>TC13122 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase, partial
           (14%)
          Length = 637

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = +3

Query: 38  FIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSK-CEFWLSEVS 83
           F  D++   + EEE  E  K      KEK+   ++ K C FW++ +S
Sbjct: 141 FFCDVMCQKQQEEEQGEGDKAASPAEKEKEKSVQV*KNCVFWVTRIS 281


>BP054462 
          Length = 422

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/43 (34%), Positives = 25/43 (57%)
 Frame = +3

Query: 697 EVDAEVYWPVSDIRKSWNSGI*SGFATTSFEFA*CVSCVATSE 739
           ++++ V W +S   K W  G+ S  AT+S   A C+SC++  E
Sbjct: 297 KIES*VLWTLSYCSKDWGCGL-ST*ATSSQ*SASCLSCLSPQE 422


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.372    0.167    0.652 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,113,066
Number of Sequences: 28460
Number of extensions: 186411
Number of successful extensions: 2454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 1409
length of query: 818
length of database: 4,897,600
effective HSP length: 98
effective length of query: 720
effective length of database: 2,108,520
effective search space: 1518134400
effective search space used: 1518134400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 59 (27.3 bits)