BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146793.2 - phase: 0
(438 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI... 194 2e-50
TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%) 131 2e-31
TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation ... 119 1e-27
TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like... 112 1e-25
BI418105 106 7e-24
AV772770 96 2e-20
TC8003 homologue to PIR|S52023|S52023 translation initiation fac... 90 8e-19
TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation... 87 4e-18
TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, p... 87 5e-18
TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation... 85 2e-17
TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA ... 85 3e-17
BP071239 84 4e-17
TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%) 82 1e-16
BP034176 80 5e-16
BI420699 77 4e-15
TC8004 homologue to PIR|S52023|S52023 translation initiation fac... 77 7e-15
BF177506 76 1e-14
AV767433 74 4e-14
TC16323 similar to UP|Q9ZS06 (Q9ZS06) RNA helicase (Fragment), p... 69 1e-12
TC10734 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5g... 68 3e-12
>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
complete
Length = 1563
Score = 194 bits (493), Expect = 2e-50
Identities = 125/380 (32%), Positives = 201/380 (52%), Gaps = 5/380 (1%)
Frame = +2
Query: 10 SFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPIL- 68
SF +GL E+L+ G++ P IQ I P +G D+I A++G+GKT F IL
Sbjct: 209 SFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 388
Query: 69 ---HALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVK 125
+ L++ A V++PTRELA QI + ALG +GVK VGG + +
Sbjct: 389 QLDYGLVQCQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 550
Query: 126 IAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRE 185
+ H +VGTPGRV D L+ + +K VLDEAD +L+ F++ + +I ++P +
Sbjct: 551 LQAGVHTVVGTPGRVFDMLRR-QSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPGK 727
Query: 186 RRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYIL 245
+ +FSATM + ++ R + PV+I T++ +KQ Y + + + L
Sbjct: 728 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDL 907
Query: 246 SE-MAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 304
E +A + S++F T L +R+ +G M Q R + +F+SG +L
Sbjct: 908 YETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 1087
Query: 305 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQ 364
+ TD+ +RG+D+ V +VINYD+PT ++Y+HR+GR+ R GR GVAI+ V +
Sbjct: 1088ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSD 1267
Query: 365 IEKLIGKKLPEYPANEEEVL 384
I+K + E P+N ++L
Sbjct: 1268IQKFYNVTVEELPSNVADLL 1327
>TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%)
Length = 1448
Score = 131 bits (330), Expect = 2e-31
Identities = 71/227 (31%), Positives = 130/227 (56%)
Frame = +3
Query: 158 LVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRNPVKIETSS 217
LV+DEAD+LL+ +F+ S+ +++ + R+ ++SAT V+ + LR P I
Sbjct: 309 LVMDEADKLLSPEFQPSIEQLIQFLSPNRQILMYSATYPVTVKDFKERYLRKPYVINLMD 488
Query: 218 KYSTVDTLKQQYRFLPAKHKDCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKA 277
+ T+ + Q Y F+ + K L + S++ + S++F + + LLA + LG
Sbjct: 489 EL-TLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSC 665
Query: 278 IPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHR 337
I+ M Q R + F++G C L+CTD+ +RG+DI AV++VIN+D P N++ Y+HR
Sbjct: 666 FYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHR 845
Query: 338 VGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVL 384
VGR+ R G G+A++L+ + +IE+ +G ++ + P + ++ +
Sbjct: 846 VGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 986
>TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation factor 4A-3
(eIF4A-3) (eIF-4A-3), partial (72%)
Length = 982
Score = 119 bits (298), Expect = 1e-27
Identities = 66/222 (29%), Positives = 124/222 (55%)
Frame = +2
Query: 6 KEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFAL 65
K + SF+++G+ + L+ + G++ P IQ A+ P ++G+D+I A++G+GKT AL
Sbjct: 158 KAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIAL 337
Query: 66 PILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVK 125
+ + + R ++SPTRELA Q + A+G I ++ VGG + + K
Sbjct: 338 TVCQVVDTSVR--EVQVLILSPTRELASQTEKVILAVGDFINIQAHACVGGKSVGEDIRK 511
Query: 126 IAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEILGMIPRE 185
+ H++ GTPGRV D +K + +K LVLDE+D +L+ F++ + ++ +P +
Sbjct: 512 LEHGVHVVSGTPGRVCDMIKR-RTLRTRTIKMLVLDESDEMLSRGFKDQIYDVYRYLPPD 688
Query: 186 RRTFLFSATMTNKVEKLQRVCLRNPVKIETSSKYSTVDTLKQ 227
+ L SAT+ +++ ++ + +PV+I T++ +KQ
Sbjct: 689 LQVCLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQ 814
>TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like protein,
partial (29%)
Length = 782
Score = 112 bits (280), Expect = 1e-25
Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 4/188 (2%)
Frame = +3
Query: 4 ENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAF 63
+N E K LG+ E +V A K G IQ + PA++G+D+IG A+TG+GKT AF
Sbjct: 228 KNDEGLEIKKLGISEEIVSALAKKGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAF 407
Query: 64 ALPILHALL----EAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDM 119
+PI+ ++ + R A ++PTRELA Q+ ++F + C + GG +
Sbjct: 408 GIPIMDKIIKFNAKHGRGRDPLALALAPTRELAKQVEKEFYDSAPNLDTIC--VNGGTPI 581
Query: 120 VQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNEDFEESLNEIL 179
QQ ++ ++VGTPGR++D L N +L ++++VLDEAD++L F+E + +IL
Sbjct: 582 SQQMRQLDYGVDVVVGTPGRIID-LLNRGALNLKEVQFMVLDEADQMLQIGFQEDVEKIL 758
Query: 180 GMIPRERR 187
+P +R+
Sbjct: 759 DRLPPKRQ 782
>BI418105
Length = 600
Score = 106 bits (265), Expect = 7e-24
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Frame = +3
Query: 6 KEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFAL 65
K +K+F+D G P ++ A +K G++ P IQ +A+P L G+D+IG+AKTGSGKT AF L
Sbjct: 147 KPVKTFEDCGFPPPVMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVL 326
Query: 66 PILHALLEAP---RPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQ 122
P++ +++ P + + +PTRELA QI + + G++ + + GG+ ++Q
Sbjct: 327 PMIVHIMDQPELQKEEGPIGVICAPTRELAQQIYLESKKFAKSYGIRVSAVYGGMSKLEQ 506
Query: 123 SVKIAKLPHIIVGTPGRVLDHLK 145
++ I+V TPGR++D LK
Sbjct: 507 FKELKAGCEIVVATPGRLIDMLK 575
>AV772770
Length = 484
Score = 95.5 bits (236), Expect = 2e-20
Identities = 57/159 (35%), Positives = 85/159 (52%), Gaps = 3/159 (1%)
Frame = +1
Query: 161 DEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRN-PVKIETSSKY 219
DEADR+L +FE+ + +I+ ++P+ R+T LFSAT T KVE L R+ + P+ I+
Sbjct: 7 DEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGR 186
Query: 220 STV--DTLKQQYRFLPAKHKDCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKA 277
+ V + L+Q Y +P + L L MVF +C+S + A +L + +
Sbjct: 187 NKVTNEGLQQGYVVVPCAKRFTVLYSFLKRNKSKKVMVFLSSCNSVKFHADLLNLIHMNC 366
Query: 278 IPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDI 316
I+G Q R F + ILLCTDVA+RGLDI
Sbjct: 367 SSIHGKQKQQARTTTFFDFCKAETGILLCTDVAARGLDI 483
>TC8003 homologue to PIR|S52023|S52023 translation initiation factor
eIF-4A.14 - common tobacco {Nicotiana tabacum;} ,
partial (34%)
Length = 708
Score = 89.7 bits (221), Expect = 8e-19
Identities = 47/137 (34%), Positives = 77/137 (55%)
Frame = +1
Query: 248 MAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCT 307
+A + S++F T L +R+ +G M Q R + +F+SG +L+ T
Sbjct: 7 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 186
Query: 308 DVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEK 367
D+ +RG+D+ V +VINYD+PT ++Y+HR+GR+ R GR GVAI+ V + + I+K
Sbjct: 187 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQK 366
Query: 368 LIGKKLPEYPANEEEVL 384
+ E P+N E+L
Sbjct: 367 FYNVVVEELPSNIAELL 417
>TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation factor
4A-3 (eIF4A-3) (eIF-4A-3), partial (28%)
Length = 651
Score = 87.4 bits (215), Expect = 4e-18
Identities = 41/105 (39%), Positives = 67/105 (63%)
Frame = +2
Query: 280 INGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVG 339
++G M Q +R + +F++G +L+ TDV +RGLD+ V +VINYD+P N + YIHR+G
Sbjct: 32 MHGDMPQRERDAIMAEFRAGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 211
Query: 340 RTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVL 384
R+ R GR GVAI+ V +++ IE+ ++ E P N +++
Sbjct: 212 RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 346
>TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, partial
(44%)
Length = 699
Score = 87.0 bits (214), Expect = 5e-18
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Frame = +3
Query: 9 KSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPIL 68
+SF +GL E+L+ G++ P IQ I P +G D+I A++G+GKT F IL
Sbjct: 276 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 455
Query: 69 ----HALLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSV 124
++L E A V++PTRELA QI + ALG +GVK VGG + +
Sbjct: 456 QQLDYSLTECQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 617
Query: 125 KIAKLPHIIVGTPGRVLDHLK 145
++ H++VGTPGRV D L+
Sbjct: 618 ILSSGVHVVVGTPGRVFDMLR 680
>TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation factor
4A-2 (eIF4A-2) (eIF-4A-2), partial (32%)
Length = 595
Score = 85.1 bits (209), Expect = 2e-17
Identities = 40/104 (38%), Positives = 64/104 (61%)
Frame = +2
Query: 281 NGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGR 340
+G M Q R + +F+SG +L+ TD+ +RG+D+ V +VINYD+PT ++Y+HR+GR
Sbjct: 80 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 259
Query: 341 TARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVL 384
+ R GR GVAI+ V + I+K + E P+N ++L
Sbjct: 260 SGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVEELPSNVADLL 391
>TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA helicase,
partial (26%)
Length = 690
Score = 84.7 bits (208), Expect = 3e-17
Identities = 42/86 (48%), Positives = 58/86 (66%)
Frame = +1
Query: 270 LRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPT 329
LR G A+ I+G SQ +R L++FKSG I+ TDVA+RGLD+ V VINYD P
Sbjct: 28 LRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPG 207
Query: 330 NSKDYIHRVGRTARAGRSGVAISLVN 355
+ +DY+HR+GRT RAG G A+ +++
Sbjct: 208 SLEDYVHRIGRTGRAGAKGTALHILH 285
>BP071239
Length = 429
Score = 84.3 bits (207), Expect = 4e-17
Identities = 44/137 (32%), Positives = 77/137 (56%)
Frame = +3
Query: 277 AIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIH 336
A I+G SQ +R L++F++G +L+ TDVA+RGLDI + +V+NYD PT +DY+H
Sbjct: 15 AAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 194
Query: 337 RVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEVLLLEERVGEAKRL 396
R+GRT RAG +G+A + + + ++ + K++ P+ ++ + ++R
Sbjct: 195 RIGRTGRAGATGLAYTFFAEQDAKYASDLIKVLEGANQRVPSELRDMSTRGGGMNRSRRW 374
Query: 397 AATKMKESGGKKRRGEG 413
+ +SG R G
Sbjct: 375 GSGGRGDSGYGARNDSG 425
>TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%)
Length = 549
Score = 82.4 bits (202), Expect = 1e-16
Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Frame = +2
Query: 152 LARLKYLVLDEADRLLNEDFEESLNEILGMI--PRERRTFLFSATMTNKVEKLQRVCLRN 209
L+R++YLVLDE+D+L D + ++ ++ P R+ LFSAT+ + VE R + +
Sbjct: 11 LSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSIIRS-LFSATLPDFVEDRARELMHD 187
Query: 210 PVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLV-YILSEMAGSTSMVFTRTCDSTRLLAL 268
V++ K + +T+KQ+ F ++ + +E +VF ++ + + L
Sbjct: 188 AVRVIVGRKNTASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYG 367
Query: 269 ILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIP 328
L ++ I+ +SQ +R A++ F++G +L+ TDV +RG+D AV+ VINYD P
Sbjct: 368 ELAFDNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFKAVNCVINYDFP 547
>BP034176
Length = 604
Score = 80.5 bits (197), Expect = 5e-16
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Frame = +2
Query: 10 SFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILH 69
+F +GL E+L+ G++ P IQ P +G D+I A++G+GKT F IL
Sbjct: 185 TFDSMGLHENLLRGIYAYGFERPSAIQQRGXVPFCKGLDVIQQAQSGTGKTATFCSGILQ 364
Query: 70 ALLEAPRPNHFF----ACVMSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVQQSVK 125
L N+ A V++PTRELA QI + ALG +GVK VGG + +
Sbjct: 365 QL------NYELVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 526
Query: 126 IAKLPHIIVGTPGRVLDHLK 145
+ H +VGTPGRV D L+
Sbjct: 527 LQAGVHTVVGTPGRVFDMLR 586
>BI420699
Length = 396
Score = 77.4 bits (189), Expect = 4e-15
Identities = 41/97 (42%), Positives = 57/97 (58%)
Frame = +2
Query: 248 MAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCT 307
M G ++F T L L G A+ I+G +Q +R L +FKSG I+ T
Sbjct: 23 MDGGRILIFMETKKGCDQLTRQLTMEGWPALSIHGDKNQAERDWVLAEFKSGISPIMTAT 202
Query: 308 DVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARA 344
DVA+RGLD+ + VINYD P++ +DY+HR+GRT RA
Sbjct: 203 DVAARGLDVKDIKFVINYDFPSSLQDYVHRIGRTGRA 313
>TC8004 homologue to PIR|S52023|S52023 translation initiation factor
eIF-4A.14 - common tobacco {Nicotiana tabacum;} ,
partial (20%)
Length = 607
Score = 76.6 bits (187), Expect = 7e-15
Identities = 34/82 (41%), Positives = 55/82 (66%)
Frame = +1
Query: 303 ILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWY 362
+L+ TD+ +RG+D+ V +VINYD+PT ++Y+HR+GR+ R GR GVAI+ V++ +
Sbjct: 7 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVSKDDERML 186
Query: 363 VQIEKLIGKKLPEYPANEEEVL 384
I+K + E P+N E+L
Sbjct: 187 FDIQKFYNVVVEELPSNIAELL 252
>BF177506
Length = 447
Score = 76.3 bits (186), Expect = 1e-14
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 6/93 (6%)
Frame = +2
Query: 6 KEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFAL 65
+ M+S+ + L + L+++ EK G+KTP IQ+ AIP L+ +D+IG+A+TGSGKT AF L
Sbjct: 167 RPMRSWDESRLSQELLKSVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVL 346
Query: 66 PILHALLEAP------RPNHFFACVMSPTRELA 92
P+L + P +A VM+PTRELA
Sbjct: 347 PMLSYITRLPPISEENEAEGPYAVVMAPTRELA 445
>AV767433
Length = 383
Score = 74.3 bits (181), Expect = 4e-14
Identities = 35/79 (44%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Frame = +3
Query: 132 IIVGTPGRVLDHLKNTKGFS--LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTF 189
I+V TPGR+ DH++NT GF+ L +K L+LDEAD LL+ F + + +I+ +P++R+T
Sbjct: 39 ILVATPGRLRDHVENTAGFASRLMGVKVLILDEADHLLDMGFRKDIEKIIAAVPKQRQTL 218
Query: 190 LFSATMTNKVEKLQRVCLR 208
LFSAT+ +V ++ + LR
Sbjct: 219 LFSATVPEEVRQVCNIALR 275
>TC16323 similar to UP|Q9ZS06 (Q9ZS06) RNA helicase (Fragment), partial
(35%)
Length = 580
Score = 69.3 bits (168), Expect = 1e-12
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 11 FKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKTGAFALPILHA 70
F+D L L+ A G++ P E+Q E IP A+ G D+I AK+G GKT F L L
Sbjct: 225 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 404
Query: 71 LLEAPRPNHFFACVMSPTRELAIQISEQFEALGSEI-GVKCAVLVGGIDM 119
+ P P A V+ TRELA QI +FE + + +K AV GG+++
Sbjct: 405 I--DPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 548
>TC10734 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (15%)
Length = 513
Score = 67.8 bits (164), Expect = 3e-12
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = +3
Query: 296 FKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVN 355
FK G IL+ TD+ RG+DI V++VINYD+P ++ Y+HRVGR R G G+AI+ V+
Sbjct: 324 FKEGQTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 503
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,322,350
Number of Sequences: 28460
Number of extensions: 77599
Number of successful extensions: 419
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of query: 438
length of database: 4,897,600
effective HSP length: 93
effective length of query: 345
effective length of database: 2,250,820
effective search space: 776532900
effective search space used: 776532900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146793.2