BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146792.2 + phase: 0
(577 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP051082 283 7e-77
TC20234 weakly similar to UP|O64785 (O64785) T1F9.16 (At1g61350/... 278 2e-75
AV773479 121 3e-54
AV426171 162 1e-40
TC16984 similar to UP|O64785 (O64785) T1F9.16 (At1g61350/T1F9_16... 160 4e-40
TC16884 weakly similar to UP|Q9FI58 (Q9FI58) Genomic DNA, chromo... 74 5e-14
AV766757 49 3e-06
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 47 1e-05
AW720177 44 9e-05
TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, ... 30 1.4
TC17548 29 1.8
BP053952 29 2.4
BP066069 27 6.9
TC7934 similar to GB|AAG40366.1|11762176|AF325014 At2g01140 {Ara... 27 9.1
TC13416 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g67... 27 9.1
>BP051082
Length = 562
Score = 283 bits (723), Expect = 7e-77
Identities = 143/172 (83%), Positives = 161/172 (93%)
Frame = -1
Query: 406 ILMSYGFVDQLLYYVRHGEVSIQELALKVAFRLSGTSEEAKKAMGDAGFMVEFVKFLNAK 465
IL++YGFVDQLLYYVR+GEVSIQELALKVA RL GTSEEAKKA+GDAGFM E VKFL AK
Sbjct: 562 ILITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAK 383
Query: 466 SFEVREMAAEALSGMVTVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLT 525
SFEVREMAAEALSGMV VP+NRKRFVQDD +IALLLQLL+P EGNS N+KFLISILMSLT
Sbjct: 382 SFEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNQKFLISILMSLT 203
Query: 526 SCNSARKKIVSSGYAKNIDKLADAEVSCDAKKLVKKLSTNRFRSMLNGIWHS 577
SCNS +KKIVSSGYA+NI++LA+AEVS DA++LV+KL+TNRFRSML+GIWHS
Sbjct: 202 SCNSGKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLSGIWHS 47
>TC20234 weakly similar to UP|O64785 (O64785) T1F9.16 (At1g61350/T1F9_16),
partial (15%)
Length = 1036
Score = 278 bits (711), Expect = 2e-75
Identities = 143/176 (81%), Positives = 157/176 (88%), Gaps = 1/176 (0%)
Frame = -1
Query: 1 MGDEELTGESQLAG-VPTGACRLRRALELICSLLSLTLSIRVFAGKWQLIRNKLEELHSG 59
MG E+ GES+ A +PTGA LRRA+ LICS+LSL+ SIRVFAGKWQ+IR+KLEEL SG
Sbjct: 529 MGGEDFAGESRTAAELPTGASILRRAVVLICSVLSLSHSIRVFAGKWQVIRSKLEELQSG 350
Query: 60 LIAAENSDSGENPSLSRLVTSIVATVKECHDLGQRCVDFSYSGKLLMQSDLDVAFSKLDG 119
LIAAEN DSGENPSLSRLV SIVATV ECHDLGQRC+D SYSGKLLMQSDLDVAF+KLDG
Sbjct: 349 LIAAENCDSGENPSLSRLVPSIVATVLECHDLGQRCIDVSYSGKLLMQSDLDVAFAKLDG 170
Query: 120 LAKKLSEIYRTGILTNGFALVVSKPCLGACKEDMRFYVRDILTRMKIGELGMKKQA 175
L KKL+EIYRTGILTNG+ALVVSKPCLGA KEDMRFYVRD+LTRMK G+ GMKKQA
Sbjct: 169 LTKKLAEIYRTGILTNGYALVVSKPCLGASKEDMRFYVRDLLTRMKXGDXGMKKQA 2
>AV773479
Length = 483
Score = 121 bits (303), Expect(2) = 3e-54
Identities = 58/71 (81%), Positives = 68/71 (95%)
Frame = +3
Query: 351 IAFGDELVRQMVIREGGIRALLRVLDPKWSYSSKTKEITMRAIESLCFTSSSSVSILMSY 410
++ GDELVRQMV+REGGIRALLR+LDPKWS SSKT+EI MRA+E+LCF+SSSSVSIL+SY
Sbjct: 270 LSSGDELVRQMVVREGGIRALLRLLDPKWSNSSKTREIAMRAVENLCFSSSSSVSILISY 449
Query: 411 GFVDQLLYYVR 421
GFVDQLLYY+R
Sbjct: 450 GFVDQLLYYLR 482
Score = 108 bits (269), Expect(2) = 3e-54
Identities = 57/88 (64%), Positives = 64/88 (71%)
Frame = +2
Query: 264 LMKLTENSDNAWAVSAHGGVTALLNICGNDDCKGDLVGPACGVLRNLVGVEEVKRFMVEE 323
LMKLTEN W VSA GGVTALLNICG+ D KGD VGPACGV RNL+GVEE+KRFM+EE
Sbjct: 11 LMKLTENRQG-WCVSAQGGVTALLNICGDADSKGDWVGPACGV*RNLLGVEEIKRFMMEE 187
Query: 324 DAVSTFIRLVKSKEEAIQVNSIGFIQNI 351
V L + + QVNSI FIQ+I
Sbjct: 188 GVVPRLSGL*NQRRKQCQVNSIAFIQSI 271
>AV426171
Length = 283
Score = 162 bits (411), Expect = 1e-40
Identities = 82/94 (87%), Positives = 86/94 (91%)
Frame = +2
Query: 207 FLGSNEVEIQEESAKVVCVLAGFDSYKGVLISAGVIAPLIRVLDCGSELGKVAAARCLMK 266
FLGS E EIQEESAKVV V+AGFDSYKGVL+ AGVIAPLIRVLDCGSELGKVA+ARCLMK
Sbjct: 2 FLGSLEEEIQEESAKVVAVVAGFDSYKGVLVGAGVIAPLIRVLDCGSELGKVASARCLMK 181
Query: 267 LTENSDNAWAVSAHGGVTALLNICGNDDCKGDLV 300
LTENSDNAW VSA GGVTALLNICG+ D KGDLV
Sbjct: 182 LTENSDNAWCVSAQGGVTALLNICGDADSKGDLV 283
>TC16984 similar to UP|O64785 (O64785) T1F9.16 (At1g61350/T1F9_16), partial
(8%)
Length = 577
Score = 160 bits (406), Expect = 4e-40
Identities = 80/91 (87%), Positives = 87/91 (94%)
Frame = +2
Query: 487 RKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSARKKIVSSGYAKNIDKL 546
RKRFVQDDHNIALLLQLLDP EG+SGN+KFLISILMSLT+CNS RKKIVSSGYAK+IDKL
Sbjct: 2 RKRFVQDDHNIALLLQLLDPHEGDSGNQKFLISILMSLTNCNSGRKKIVSSGYAKHIDKL 181
Query: 547 ADAEVSCDAKKLVKKLSTNRFRSMLNGIWHS 577
A+AE S DA++LVKKLSTNRFRSMLNGIWHS
Sbjct: 182 AEAEGSSDAQRLVKKLSTNRFRSMLNGIWHS 274
>TC16884 weakly similar to UP|Q9FI58 (Q9FI58) Genomic DNA, chromosome 5, TAC
clone:K3K7, partial (24%)
Length = 682
Score = 74.3 bits (181), Expect = 5e-14
Identities = 45/142 (31%), Positives = 82/142 (57%)
Frame = +1
Query: 425 VSIQELALKVAFRLSGTSEEAKKAMGDAGFMVEFVKFLNAKSFEVREMAAEALSGMVTVP 484
++++ A + L +S + +K MG+ G + +K L+ K E +E AA ALS ++ P
Sbjct: 1 LAVRIAAARAVHALGLSSGKTRKEMGECGCVPGLIKMLDGKGVEEKEAAAMALSVLLIHP 180
Query: 485 RNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSARKKIVSSGYAKNID 544
NR+ F +D+ I + LL+P N +KK+ +S+L+SL S RK++V++G ++
Sbjct: 181 GNRRVFRKDETGIVSAVHLLNPSLQNL-DKKYPVSLLLSLVHSQSCRKQMVAAGACVHMQ 357
Query: 545 KLADAEVSCDAKKLVKKLSTNR 566
KL + +V +KKL++ L +
Sbjct: 358 KLVEMDVP-GSKKLLESLGRGK 420
>AV766757
Length = 601
Score = 48.5 bits (114), Expect = 3e-06
Identities = 47/182 (25%), Positives = 78/182 (42%)
Frame = +2
Query: 175 ALRNLLEVVVEDEKYVKVIVVDVSDVVHVLVGFLGSNEVEIQEESAKVVCVLAGFDSYKG 234
AL NL + E+ K V V +VHVL +E +E +A + L+ D K
Sbjct: 53 ALLNLS--IYENNKGCIVSSGAVPGIVHVL----RKGSMEARENAAATLFSLSVVDENKV 214
Query: 235 VLISAGVIAPLIRVLDCGSELGKVAAARCLMKLTENSDNAWAVSAHGGVTALLNICGNDD 294
+ S+G I PL+ +L G++ GK AA L L N G + L+ + +
Sbjct: 215 TIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMKLL--TE 388
Query: 295 CKGDLVGPACGVLRNLVGVEEVKRFMVEEDAVSTFIRLVKSKEEAIQVNSIGFIQNIAFG 354
G +V A +L L + K + DAV + + + + NS + +++ G
Sbjct: 389 PSGGMVDEALAILAILSSHPDGKAAIGAADAVPILVEFIGNGSPRNKENSAAVLVHLSSG 568
Query: 355 DE 356
D+
Sbjct: 569 DQ 574
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 46.6 bits (109), Expect = 1e-05
Identities = 53/239 (22%), Positives = 101/239 (42%)
Frame = +3
Query: 172 KKQALRNLLEVVVEDEKYVKVIVVDVSDVVHVLVGFLGSNEVEIQEESAKVVCVLAGFDS 231
++ A+ LL + + DE K ++ + V L+ L + ++ +A + LA +
Sbjct: 408 QEHAVTALLNLSLNDEN--KKLITNAG-AVKSLIYVLKTGTETSKQNAACALLSLALVEE 578
Query: 232 YKGVLISAGVIAPLIRVLDCGSELGKVAAARCLMKLTENSDNAWAVSAHGGVTALLNICG 291
+ + ++G I PL+ +L GS GK A L KL N G V L+++
Sbjct: 579 NRSSIGASGAIPPLVSLLINGSSRGKKDALTTLYKLCSVKLNKERAVNAGVVKPLVDLVA 758
Query: 292 NDDCKGDLVGPACGVLRNLVGVEEVKRFMVEEDAVSTFIRLVKSKEEAIQVNSIGFIQNI 351
L A VL +L V++ K +VEE ++ + ++ + ++ + +
Sbjct: 759 EQGT--GLAEKAMVVLNSLAAVQDGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQL 932
Query: 352 AFGDELVRQMVIREGGIRALLRVLDPKWSYSSKTKEITMRAIESLCFTSSSSVSILMSY 410
R +++REGGI L+ + + E +R + +SSS S +Y
Sbjct: 933 CVDSVRNRGLLVREGGIPPLVSLSQSGTPRAKHKAETLLRYLRESRQEASSSGS*RSNY 1109
>AW720177
Length = 505
Score = 43.5 bits (101), Expect = 9e-05
Identities = 37/114 (32%), Positives = 54/114 (46%), Gaps = 6/114 (5%)
Frame = +3
Query: 26 LELICSLLSLTL-SIRVFAGKWQLIRNKLEELHSGLI---AAENSDSGENPSLSRLVTSI 81
+ L+ SLL + +++ KW L+R KL L + L A S S NP L S+
Sbjct: 114 VHLLTSLLDEEIPTVQNLKTKWSLVRVKLTNLQTHLTDFSAEFPSSSATNPLSLDLFHSL 293
Query: 82 VATVKECHDLGQRCVDFSY--SGKLLMQSDLDVAFSKLDGLAKKLSEIYRTGIL 133
AT+ L Q+C ++ GKL QSDLD + LD + R+G+L
Sbjct: 294 SATLHSAVSLAQQCHSPTHLPRGKLQTQSDLDSLLATLDCHLSHCDILLRSGLL 455
>TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, partial
(34%)
Length = 1102
Score = 29.6 bits (65), Expect = 1.4
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Frame = +1
Query: 12 LAGVPTGACRLRRALELICSLLSLTLSIRVFAGKWQLIRNKLEELHSGLIAAENSDSGE- 70
+ G P AC + ++ + LT+SIR F G W L L+ L +G++ + +G
Sbjct: 394 VVGFPFIACHPAQHSRVLLPSIFLTVSIRCFVGPWVL----LKSL*AGIVPCGMATTGS* 561
Query: 71 NPSLSRLVTSIVAT 84
S L+ ++++T
Sbjct: 562 RASRGLLILTLLST 603
>TC17548
Length = 502
Score = 29.3 bits (64), Expect = 1.8
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 137 FALVVSKPCLGACKEDMRFYVRD-----ILTRMKIGELGMKKQALRNLLEVVVEDEKYVK 191
F + +K C+ + + + D +L M++ E G +++ L + D++ +
Sbjct: 179 FIVQATKDCVAKTLKRLEEKIHDRVLSHLLYLMRVSEKGFQRRVALALAHLCSADDQ--R 352
Query: 192 VIVVDVSDVVHVLVGFLGSNEVEIQEESAKVVCVLA 227
I +D + + +L+G LGS+ + Q + A +C LA
Sbjct: 353 RIFID-NHGLELLIGLLGSSSSKQQLDGAVALCKLA 457
>BP053952
Length = 462
Score = 28.9 bits (63), Expect = 2.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 465 KSFEVREMAAEALSGMVTVPRNRKRFVQDDHNIALLLQLLDP 506
+++ + + ++ G P +KRF +D+ A LQ+LDP
Sbjct: 235 RAYRGQPLRVDSWKGKQNNPH*KKRFFLEDYRCATFLQMLDP 360
>BP066069
Length = 488
Score = 27.3 bits (59), Expect = 6.9
Identities = 19/55 (34%), Positives = 32/55 (57%)
Frame = -1
Query: 365 EGGIRALLRVLDPKWSYSSKTKEITMRAIESLCFTSSSSVSILMSYGFVDQLLYY 419
E GI LLR+L S+T +M+ +++CF SS+S L+S F+ ++Y+
Sbjct: 281 ESGIMKLLRLLF*CLCRKSRTS*RSMKYFDAVCF---SSLSYLIS--FLSAMIYF 132
>TC7934 similar to GB|AAG40366.1|11762176|AF325014 At2g01140 {Arabidopsis
thaliana;}, partial (94%)
Length = 1536
Score = 26.9 bits (58), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +1
Query: 117 LDGLAKKLSEIYRTGILTNGFALVVSKPC 145
LDGLA + +E Y+ G + VVS PC
Sbjct: 532 LDGLASRSAEYYKQGARFAKWRTVVSIPC 618
>TC13416 weakly similar to GB|AAP21292.1|30102748|BT006484 At1g67530
{Arabidopsis thaliana;}, partial (23%)
Length = 557
Score = 26.9 bits (58), Expect = 9.1
Identities = 18/57 (31%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = +2
Query: 217 EESAKVVCVLAGFDSYKGVLISA-GVIAPLIRVLDCGSELGKVAAARCLMKLTENSD 272
E+ V+ LA + + ++SA G+I+ L +LD G + + AA CL+ L S+
Sbjct: 386 EKCIAVLINLATSQAGREEMVSAPGLISALASILDIGELIVQEQAASCLLILCNRSE 556
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,289,993
Number of Sequences: 28460
Number of extensions: 96959
Number of successful extensions: 443
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of query: 577
length of database: 4,897,600
effective HSP length: 95
effective length of query: 482
effective length of database: 2,193,900
effective search space: 1057459800
effective search space used: 1057459800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146792.2