BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146791.7 + phase: 0 /pseudo
(694 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720134 32 0.44
TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier prot... 30 1.3
BP064571 30 1.3
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 29 2.2
TC18370 29 2.9
AW719654 24 4.2
AV414644 28 4.9
BP041245 28 4.9
AV781200 27 8.4
TC9115 similar to PIR|T00425|T00425 photolyase/blue-light recept... 27 8.4
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 27 8.4
>AW720134
Length = 515
Score = 31.6 bits (70), Expect = 0.44
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 444 GVGGYLLIEEGCGIGCWLVDMVLGMGGWRMG-AGVVLFGGRRLVGLEEGR----VGAVLD 498
GV L+ G + + V G+GG G GVV FGG G+EEG VGAV
Sbjct: 254 GVDDALVANGGVDVAAAHEESVGGVGGGGSGNGGVVEFGGVGGEGVEEGSEVEVVGAVGG 75
Query: 499 GLRVVWLGVWVMGRILCF 516
G + V + G +LCF
Sbjct: 74 GGVG*AVFVKINGSVLCF 21
>TC14365 similar to UP|Q9XFC1 (Q9XFC1) Stearoyl acyl carrier protein
desaturase Lldd3A20, partial (94%)
Length = 1539
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/74 (37%), Positives = 32/74 (42%), Gaps = 3/74 (4%)
Frame = +2
Query: 466 LGMGGWRMGAGVVLFGGRR---LVGLEEGRVGAVLDGLRVVWLGVWVMGRILCFGMSGGV 522
L GGWR + GGRR VGL G +G +GL M+G V
Sbjct: 1010 LNGGGWRSWWD*TVRGGRRRISCVGLRLG-LGGCRNGL-----------------MNGPV 1135
Query: 523 EMSLSGLDLEGYLI 536
SL GL L GYLI
Sbjct: 1136 R*SLKGLSLVGYLI 1177
>BP064571
Length = 439
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = +1
Query: 453 EGCGIGCWLVDMVLGMGGWRMGAGVVLFGGRRLVGLEEGRVGAVLDGL 500
EG G+G L + +G+G W + G LFGGR +G+ ++ + GL
Sbjct: 223 EG*GLGMVLRSLQMGVGAW*VATG--LFGGR--LGIAASKLSTGMGGL 354
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 29.3 bits (64), Expect = 2.2
Identities = 26/69 (37%), Positives = 32/69 (45%)
Frame = -2
Query: 402 GGVVRIIEKYLGWVGREFV*ERSMVV*ELGS*GSLMRRC*GSGVGGYLLIEEGCGIGCWL 461
GG V E G VG + V ER V E + G + G G G E G GCW+
Sbjct: 428 GGGVEEAEGAAGGVGWDLVAERGEVEGEAIAVGGFVDGGDGEGEAGG---EVGECFGCWV 258
Query: 462 VDMVLGMGG 470
V+ V G+GG
Sbjct: 257 VE-VEGLGG 234
>TC18370
Length = 397
Score = 28.9 bits (63), Expect = 2.9
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 481 GGRRLVGLEEGRVGAVL--DGLRVVWLGVWVMGRILCFGMSGGVEMSLSGLD 530
G ++G+ R GA DG + LGV ++ C G GGVE+SL G+D
Sbjct: 354 GSLSVLGVSLLRAGACGGGDGGSLSVLGVSLLRAGACGGGDGGVEVSLQGVD 199
>AW719654
Length = 491
Score = 24.3 bits (51), Expect(2) = 4.2
Identities = 14/30 (46%), Positives = 16/30 (52%)
Frame = -2
Query: 499 GLRVVWLGVWVMGRILCFGMSGGVEMSLSG 528
G RV L W GR+L G GGV + SG
Sbjct: 337 GWRVGTLKKWKGGRVLV*GSGGGVAVWGSG 248
Score = 22.3 bits (46), Expect(2) = 4.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 555 GGRGMAVASKIVGVGGGASC 574
GG +AVA G GGG C
Sbjct: 258 GGVAVAVAEAEGGEGGGGEC 199
>AV414644
Length = 255
Score = 28.1 bits (61), Expect = 4.9
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 364 SLS*LRYLSMLFPSSKAPAGTISSIKSILSKKKNFF 399
SLS +R LS PSS A A S K +KKN F
Sbjct: 135 SLSFIRTLSTSSPSSSAAAADTSKPKKSKRRKKNLF 242
>BP041245
Length = 516
Score = 28.1 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 5/39 (12%)
Frame = +2
Query: 453 EGCGIGC-----WLVDMVLGMGGWRMGAGVVLFGGRRLV 486
+G G GC W++ + +GGWR V+ GGR L+
Sbjct: 365 KGQGGGC*TVVTWIITCRITLGGWRSVWLVIAIGGRLLL 481
>AV781200
Length = 556
Score = 27.3 bits (59), Expect = 8.4
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -3
Query: 431 GS*GSLMRRC*GSGVGGYLLIEEGCGIGCWLVDMVLGMGGWRMGAG 476
G G + C*GS GG W V G GGWR GAG
Sbjct: 200 GRVGGVGGEC*GSDEGG------------WAVKGK*GRGGWRGGAG 99
>TC9115 similar to PIR|T00425|T00425 photolyase/blue-light receptor (PHR2)
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (55%)
Length = 1018
Score = 27.3 bits (59), Expect = 8.4
Identities = 32/104 (30%), Positives = 44/104 (41%), Gaps = 19/104 (18%)
Frame = -2
Query: 434 GSLMRRC*GSGVGGYLLIEEGCGIG---------CWLVDM-----VLGMGGWRMGAGV-- 477
G + RR G G GG L EG G G W + V G GWR+G G+
Sbjct: 423 GGVRRRWKGRGGGGGLR-SEGRGGGWRRGWI*RRIWAARVRWWWRVRGG*GWRLGLGL*P 247
Query: 478 --VLFGGRRLVGLEEGRVGAVLDGLRVVWLGVW-VMGRILCFGM 518
V+ G++++G+ GR G G W V GR++ M
Sbjct: 246 CWVVVVGKKMMGIWVGRRG-----------GWWRVKGRVMLLRM 148
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 27.3 bits (59), Expect = 8.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 552 DGGGGRGMAVASKIVGVGGGA 572
DGGGGRG G GGGA
Sbjct: 999 DGGGGRGSGGGEGAAGGGGGA 1061
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.370 0.171 0.670
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,525,230
Number of Sequences: 28460
Number of extensions: 215638
Number of successful extensions: 3160
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 2017
length of query: 694
length of database: 4,897,600
effective HSP length: 97
effective length of query: 597
effective length of database: 2,136,980
effective search space: 1275777060
effective search space used: 1275777060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146791.7