BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146791.3 - phase: 0 /pseudo
(400 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14847 homologue to UP|Q9XG98 (Q9XG98) Phosphoribosyl pyrophosp... 381 e-123
TC14846 homologue to PIR|S71262|S71262 ribose-phosphate diphosph... 220 1e-71
BP034655 37 0.006
BP085186 35 0.029
TC12433 homologue to UP|Q9XG98 (Q9XG98) Phosphoribosyl pyrophosp... 35 0.029
AV777838 33 0.064
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 33 0.084
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 32 0.19
TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%) 32 0.19
TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacety... 32 0.24
BP048314 32 0.24
BP045655 31 0.32
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 31 0.32
BF177754 31 0.42
BP055114 30 0.71
BP033626 29 1.2
AI967639 29 1.6
AW720070 28 2.1
AV410716 28 2.1
TC19179 28 2.1
>TC14847 homologue to UP|Q9XG98 (Q9XG98) Phosphoribosyl pyrophosphate
synthase , partial (75%)
Length = 756
Score = 381 bits (978), Expect(3) = e-123
Identities = 193/198 (97%), Positives = 194/198 (97%)
Frame = +1
Query: 153 TCPPANENLMELQVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITK 212
T PPANENLMELQVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITK
Sbjct: 58 TSPPANENLMELQVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITK 237
Query: 213 AGADRVLACDLHSGQSMGYFDIPVDHVHCQPVILDYLASKTISSNDLVVVSPDVGGVARA 272
AGADRVLACDLHSGQ+MGYFDIPVDHV CQPVILDYLASKTISSNDLVVVSPDVGGVARA
Sbjct: 238 AGADRVLACDLHSGQAMGYFDIPVDHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARA 417
Query: 273 RAFAKKLSDAPLAIVDKRRSGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLH 332
RAFAKKLSDAPLAIVDKRR GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLH
Sbjct: 418 RAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLH 597
Query: 333 EEGAREVYACCTHGVFSL 350
EEGAREVYACCTHGVF L
Sbjct: 598 EEGAREVYACCTHGVFRL 651
Score = 57.8 bits (138), Expect(3) = e-123
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = +3
Query: 367 VQRLISRGDNHEHYSGSREELFPPVNYSYRSKPV 400
VQ LISRGD ++H+S SREELFP VNYSYRSKPV
Sbjct: 651 VQWLISRGDYYKHHSSSREELFPAVNYSYRSKPV 752
Score = 42.4 bits (98), Expect(3) = e-123
Identities = 18/19 (94%), Positives = 19/19 (99%)
Frame = +2
Query: 134 VYVQLQESVRGCNVYLIQP 152
+YVQLQESVRGCNVYLIQP
Sbjct: 2 IYVQLQESVRGCNVYLIQP 58
>TC14846 homologue to PIR|S71262|S71262 ribose-phosphate diphosphokinase
isoform II [validated] - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;} , partial
(55%)
Length = 689
Score = 220 bits (561), Expect(2) = 1e-71
Identities = 111/113 (98%), Positives = 111/113 (98%)
Frame = +1
Query: 237 DHVHCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRSGHNV 296
DHV CQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRR GHNV
Sbjct: 1 DHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNV 180
Query: 297 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFS 349
AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFS
Sbjct: 181 AEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFS 339
Score = 66.6 bits (161), Expect(2) = 1e-71
Identities = 31/41 (75%), Positives = 35/41 (84%)
Frame = +3
Query: 360 PSCNREAVQRLISRGDNHEHYSGSREELFPPVNYSYRSKPV 400
PSCN + VQ LISRGD ++H+S SREELFP VNYSYRSKPV
Sbjct: 339 PSCN*KVVQWLISRGDYYKHHSSSREELFPAVNYSYRSKPV 461
>BP034655
Length = 517
Score = 37.0 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 52 VVITFFLFFILLCFIFVFFFTFFIFLLEM*YVGSIKCC 89
++ FF FF F F FFF FF F VG K C
Sbjct: 231 ILFVFFFFFFFFFFFFFFFFFFFFFFFLFIVVGESKIC 118
Score = 33.1 bits (74), Expect = 0.084
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 39 VDLSRSRTVAYNTVVITFFLFFILLCFIFVFFFTFFIF 76
V++ R+ N V+ F+FFI+L F FFF FF F
Sbjct: 300 VNVGRNPMRRCNGNVVFIFVFFIILFVFFFFFFFFFFF 187
Score = 29.6 bits (65), Expect = 0.93
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 54 ITFFLFFILLCFIFVFFFTFFIF 76
I F+FF F F FFF FF F
Sbjct: 234 IILFVFFFFFFFFFFFFFFFFFF 166
>BP085186
Length = 388
Score = 34.7 bits (78), Expect = 0.029
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 53 VITFFLFFILLCFIFVFFFTFFIF 76
+ F LFF+ CF F FFF FF F
Sbjct: 164 IFLFILFFLWFCFFFFFFFFFFFF 235
Score = 30.8 bits (68), Expect = 0.42
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 54 ITFFLFFILLCFIFVFFFTFFIF 76
I FFL+F F F FFF FF F
Sbjct: 176 ILFFLWFCFFFFFFFFFFFFFFF 244
Score = 29.6 bits (65), Expect = 0.93
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 56 FFLFFILLCFIFVFFFTFFI 75
FF FF F F FFF FFI
Sbjct: 203 FFFFFFFFFFFFFFFFFFFI 262
>TC12433 homologue to UP|Q9XG98 (Q9XG98) Phosphoribosyl pyrophosphate
synthase , partial (19%)
Length = 413
Score = 34.7 bits (78), Expect = 0.029
Identities = 21/62 (33%), Positives = 25/62 (39%)
Frame = -2
Query: 334 EGAREVYACCTHGVFSLIMFVLLYLQPSCNREAVQRLISRGDNHEHYSGSREELFPPVNY 393
EGAREVYAC TH VFS P L ++++ S R P
Sbjct: 412 EGAREVYACTTHAVFS----------PPAIERGSAALFQEAYHYQYNSSGRNRTISPY*L 263
Query: 394 SY 395
SY
Sbjct: 262 SY 257
>AV777838
Length = 565
Score = 33.5 bits (75), Expect = 0.064
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +3
Query: 1 MASSLFQLQHTSSSTMPFAPSSFFSGVSHGLTFPTLGFVDLSRSRTVAYNTVVITFFLFF 60
++S F + TSSS+ P F G T F L+R+R ++ +FF FF
Sbjct: 75 LSSPFFSIFLTSSSSSWSPPLLF------GQATTTASF--LTRARRWPHHHHWASFFFFF 230
Query: 61 ILLCFIFVFFFTFF 74
F F FFF FF
Sbjct: 231 FFFFFFFFFFFFFF 272
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 33.1 bits (74), Expect = 0.084
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 51 TVVITFFLFFILLCFIFVFFFTFFIFL 77
T++ F LFF LL F FFF FF+ L
Sbjct: 270 TLLFLFLLFFFLLHFFLYFFFDFFVLL 190
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 32.0 bits (71), Expect = 0.19
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -2
Query: 18 FAPSSFFSGVSHGLTFPTLGFVDLSRSRTVAYNTVVITFFLFFILLCFIFVFFFTFFIF 76
F S + ++ L FP L V V++ FLF I++ FIF+F F IF
Sbjct: 922 FTRSGLATALTLALPFPFL----------VILIIVIVILFLFIIIIIFIFIFITIFIIF 776
>TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%)
Length = 5664
Score = 32.0 bits (71), Expect = 0.19
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 55 TFFLFFILLCFIFVFFFTFFIFLLEM 80
+FFLFF+ F FF TFF F + +
Sbjct: 2299 SFFLFFVFFYFFLFFFLTFFCFFVRI 2222
Score = 29.3 bits (64), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -3
Query: 49 YNTVVITFFLFFILLCFIFVFFFTFFIFLLEM 80
+ T FF+FF F F+ FF FF+ ++ +
Sbjct: 2308 FYTSFFLFFVFFYFFLFFFLTFFCFFVRIIRV 2213
>TC11276 weakly similar to UP|HDA1_CHICK (P56517) Histone deacetylase 1
(HD1), partial (5%)
Length = 636
Score = 31.6 bits (70), Expect = 0.24
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -2
Query: 50 NTVVITFFLFFILLCFIFVFFFTFF--IFLLEM*YVG 84
N V +++ LF LL F+F+F FF +FLL + ++G
Sbjct: 215 NRVNLSWLLFLFLLFFLFIFLLFFFLGLFLLRLFFLG 105
Score = 26.6 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 56 FFLFFILLCFIFV-FFFTFFIFLLEM 80
F L+ I L F+F+ FFF +F+FL +
Sbjct: 101 FTLWLIFLLFLFLGFFFLWFLFLFRL 24
>BP048314
Length = 394
Score = 31.6 bits (70), Expect = 0.24
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 56 FFLFFILLCFIFVFFFTFFIFL 77
FF FF F F FFF FF+F+
Sbjct: 240 FFFFFFFFFFFFFFFFFFFMFI 175
>BP045655
Length = 583
Score = 31.2 bits (69), Expect = 0.32
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = -2
Query: 308 GKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACC 343
G+ A++VDD+I T GT+ LL GA V C
Sbjct: 474 GERALVVDDLIATGGTLCAAMDLLERVGAEVVECAC 367
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 31.2 bits (69), Expect = 0.32
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 17 PFAPSSFFSGVSHGLTFPTLGFVDLSRSRTVAYNTVVITFFLFF--ILLCFIFVFFFTFF 74
PF + FF + L F TL F+ + + FFL F LLC F+FFFTFF
Sbjct: 232 PFFTTLFFFVII--LFFTTLFFL--------GFLCCFLLFFLLFRFTLLCCRFLFFFTFF 83
Query: 75 IFL 77
L
Sbjct: 82 FLL 74
Score = 30.0 bits (66), Expect = 0.71
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = -2
Query: 52 VVITFFLFFILLCFIFVFFFTFFIFLLEM*YVGSIKC 88
V++ FFL F F +FFF +F + ++G + C
Sbjct: 265 VIVLFFLSFFFPFFTTLFFFVIILFFTTLFFLGFLCC 155
>BF177754
Length = 416
Score = 30.8 bits (68), Expect = 0.42
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = -2
Query: 36 LGFVDLSRSRTVAYNTVVITFFLFFILLCFIFVFFFTFFIF 76
L F+ L S + ++ +TF L F+LL F +FF F+F
Sbjct: 160 LFFLFLMLSILSVFLSLFLTFLLLFVLLIFFMLFFSPLFLF 38
>BP055114
Length = 545
Score = 30.0 bits (66), Expect = 0.71
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 49 YNTVVITFFLFFILLCFIFVFFFTF 73
Y ++ +F+FF++LC+ F+F TF
Sbjct: 391 YQNHIVGWFIFFVVLCYKFLF*LTF 317
>BP033626
Length = 487
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -2
Query: 50 NTVVITFFLFFILLCFIFVFFFTFFIFLL 78
N ++I FFLFF+ + F FFIF L
Sbjct: 282 NYILIFFFLFFVFFKHPSIIFIIFFIFKL 196
>AI967639
Length = 335
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 33 FPTLGFVDLS--RSRTVAYNTVVITFFLFFILLCFIFVFFFTFFI 75
F GFV ++ V ++I FF F ++ +FFF FFI
Sbjct: 237 FNFAGFVTITILTDAQVVVIVIIIVFFFIFKIIFIPLIFFFIFFI 103
>AW720070
Length = 484
Score = 28.5 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Frame = -2
Query: 51 TVVITFFLFFILLC---------FIFVFFFTFFIF 76
T FF FF C F F+FFF FF+F
Sbjct: 216 TAAFFFFFFFFSCCCDDSFFTCFFFFLFFFFFFLF 112
>AV410716
Length = 424
Score = 28.5 bits (62), Expect = 2.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 61 ILLCFIFVFFFTFFIF 76
I LCF F FFF FF F
Sbjct: 220 IFLCFFFFFFFFFFFF 173
>TC19179
Length = 585
Score = 28.5 bits (62), Expect = 2.1
Identities = 14/23 (60%), Positives = 16/23 (68%), Gaps = 1/23 (4%)
Frame = +3
Query: 55 TFFLFF-ILLCFIFVFFFTFFIF 76
+FFLFF L FIFV F +FF F
Sbjct: 336 SFFLFFSTFLLFIFVIFSSFFFF 404
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.146 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,659,551
Number of Sequences: 28460
Number of extensions: 92524
Number of successful extensions: 1807
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of query: 400
length of database: 4,897,600
effective HSP length: 92
effective length of query: 308
effective length of database: 2,279,280
effective search space: 702018240
effective search space used: 702018240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146791.3