BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.9 + phase: 0
(1349 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP057233 180 2e-45
AV780009 140 2e-33
BP066094 122 1e-29
BP075943 103 2e-22
BP063694 96 5e-20
AV766088 88 8e-18
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 82 4e-16
BP084332 80 2e-15
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 79 6e-15
AU088980 78 1e-14
AV764934 77 1e-14
AV769206 76 4e-14
BP033602 75 5e-14
BI418295 74 2e-13
BP043850 72 4e-13
AV424544 68 1e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 66 4e-11
BP030371 63 4e-10
AV779281 63 4e-10
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 62 6e-10
>BP057233
Length = 473
Score = 180 bits (456), Expect = 2e-45
Identities = 86/88 (97%), Positives = 88/88 (99%)
Frame = -2
Query: 1262 KLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQI 1321
KLP+PRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQN+VVVAYVPTTDQI
Sbjct: 472 KLPMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQI 293
Query: 1322 ADCLTKPLSHTRFSQLRDKLGVIHSPPV 1349
ADCLTKPLSHTRFSQLRDKLGVIHSPPV
Sbjct: 292 ADCLTKPLSHTRFSQLRDKLGVIHSPPV 209
>AV780009
Length = 529
Score = 140 bits (352), Expect = 2e-33
Identities = 72/173 (41%), Positives = 101/173 (57%)
Frame = -1
Query: 1165 QGIKRILRYLQGTINYCLHIKPSTDLDITGFSDADWATSIDDRKSMAGQCVFLGETLISW 1224
Q R+LRY++G L + L + +SD+DWA D R+S+ G +FLG +LISW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1225 SSRKQKVVSRSSTESEYRALVDLAAEIAWIHSLLFELKLPLPRKPILWCDNLSAKALASN 1284
++KQ VSRSS+E+EYRAL E+ W+ L LKL +P L+CDN SA +A N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1285 PVLHARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQIADCLTKPLSHTRFSQL 1337
P H R+KHIE+D H +R ++ + + + T Q+AD TKP H F L
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCPHLCFPLL 11
>BP066094
Length = 532
Score = 122 bits (306), Expect(2) = 1e-29
Identities = 60/148 (40%), Positives = 92/148 (61%)
Frame = +2
Query: 927 KVSTVRVILSIAVHLNWEVRQLDINNAFLNGYLKETVFMHQPEGFVDPTKPNHICKLSKA 986
K +R+++S +V+ N + Q+++ +AFLNGY+ E V++HQP G D +HI KL K+
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 987 IYGLKQAPRAWFDSLKTALLNWGFQNTKSDPSLFLLKGKDHITFLLIYVDDIIVTGSSNN 1046
+YGLKQAPRAW++ L + LL K D +LF KD I + IYVDDII ++ +
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448
Query: 1047 FLQAFIKQLNDVFSLKDLGRLHYFLGIE 1074
+ F + + F ++ +G L YFLGI+
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 26.2 bits (56), Expect(2) = 1e-29
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 900 RRKARLVAKGFQQTAGIDYEETFSPVVK 927
+++ + + Q GIDY ETF+PV +
Sbjct: 9 QKQGKASCSRYSQQ*GIDYTETFAPVAR 92
>BP075943
Length = 547
Score = 103 bits (256), Expect = 2e-22
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 5/154 (3%)
Frame = -3
Query: 1029 TFLLIYVDDIIVTGSSNNFLQAFIKQLNDVFSLKDLGRLHYFLGIEVQRDASGMYLKQSK 1088
T LL+YVDD+++ G+ + +Q L+D F +KDLG YFLG+E+ R SG+ L Q K
Sbjct: 527 TALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRK 348
Query: 1089 YIGDLLKK-----FKMENASPCPTPMITGRHFTVEGEKLKDPTVFRQAIGGLQYLTHTRP 1143
Y L+ F+ S G T G L D +R+ +G L YL TRP
Sbjct: 347 YALQLISDSGHFGFQPRFYSHGTNSQTLG---TNTGTPLTDIGSYRRIVGRLLYLNTTRP 177
Query: 1144 DIAFSVNKLSQYMSSPTTDHWQGIKRILRYLQGT 1177
DI F+VN+LSQ++S+PT H Q + L+YL G+
Sbjct: 176 DITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GS 75
>BP063694
Length = 511
Score = 95.5 bits (236), Expect = 5e-20
Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Frame = -2
Query: 399 VKEKLTGKVILKGLLKNGLYQLSD------TKGNPYAFVSVKESWHRRLGHPNNKVLDKV 452
++ + TG V+ + GLY L+ T +P S E WH RLGH N ++ ++
Sbjct: 486 IQNRKTGAVLGRXRCDQGLYVLNQDSQALLTTSSPLPRASF-ELWHSRLGHVNFDIIKQL 310
Query: 453 LKSCNVKVPPS-DNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMSSSG 511
K + V C +CQ K L F ++ A L+L+H D+ GP+P+ S G
Sbjct: 309 HKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASIDG 130
Query: 512 FKYYVHFIDDFSRFTWIYPLKQKSE 536
F Y+V F+DDFSRFTW YPLK+KS+
Sbjct: 129 FSYFVIFVDDFSRFTWFYPLKRKSD 55
>AV766088
Length = 501
Score = 88.2 bits (217), Expect = 8e-18
Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Frame = -3
Query: 428 YAFVSVKES-WHRRLGHPNNKVLDKVLKSCNVKVPPSDNFSFCEACQYGKMHLLPFKSSS 486
+ F + +S WH RLGHP++ L + + + + CE+C +GK LPF SS+
Sbjct: 334 FPFAGIAQSLWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSN 155
Query: 487 SHAQEPLELVHTDVWGPAPIMSSSGFKYYVHFIDDFSRFTWIYPLKQKSE 536
+ P +++H+D+W +P++SS+G ++YV F+DDF+ F W +PL KS+
Sbjct: 154 NVTVMPFDILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 82.4 bits (202), Expect = 4e-16
Identities = 37/93 (39%), Positives = 63/93 (66%)
Frame = +1
Query: 1253 WIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNKVVV 1312
W+ LL +LK+P + +++CDN SA+ +A+NPV H R+KHIEID H +R+++ + + +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1313 AYVPTTDQIADCLTKPLSHTRFSQLRDKLGVIH 1345
+ +++ +AD TK LS F Q+ KLG+I+
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKLGLIN 282
>BP084332
Length = 368
Score = 80.5 bits (197), Expect = 2e-15
Identities = 39/107 (36%), Positives = 67/107 (62%)
Frame = +2
Query: 1229 QKVVSRSSTESEYRALVDLAAEIAWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLH 1288
Q ++ S+ E+EY + + ++ W+ L + ++ PI +CDN +A +L+ NP+LH
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPI-YCDNTAAISLSKNPILH 208
Query: 1289 ARSKHIEIDVHYIRDQVLQNKVVVAYVPTTDQIADCLTKPLSHTRFS 1335
+R+KHIE+ H+IRD V + +++ +V T Q AD TKPL+ RF+
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFN 349
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 78.6 bits (192), Expect = 6e-15
Identities = 37/96 (38%), Positives = 61/96 (63%)
Frame = +1
Query: 1250 EIAWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNK 1309
E+ W+ +L +L++P +L+CD+ SA+ +A+N V H R+KH++ID H +R+++
Sbjct: 4 EL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKL 183
Query: 1310 VVVAYVPTTDQIADCLTKPLSHTRFSQLRDKLGVIH 1345
+ + + DQ AD LTKPL FS L KLGV++
Sbjct: 184 FHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLN 291
>AU088980
Length = 360
Score = 77.8 bits (190), Expect = 1e-14
Identities = 39/105 (37%), Positives = 51/105 (48%)
Frame = +2
Query: 587 NGRAERKHRHIAEFGLTLLAQAQMPLHYWWEAFSTAVYLINRLPSQVTQNESPYSLIFHK 646
N ERKHRHI L+ + +P + W A A YLIN LPS + + + PY + +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 647 EPNYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGY 691
P LK FG CY +N KL +CVFLG+ GY
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV764934
Length = 406
Score = 77.4 bits (189), Expect = 1e-14
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = -2
Query: 429 AFVSVKESWHRRLGHPNNKVLDKVLKSCNVKVPPSDNFSFCEACQYGKMHLLPFKSSSSH 488
AFV++ +WH RLGHP+ L +VL SCNV P D F AC GK H LP + S++
Sbjct: 234 AFVTLS-TWHSRLGHPHLDNLKRVLSSCNVSYSPKDTVEFRTACCLGKAHRLPSQMSTT- 61
Query: 489 AQEPLELVHTDVWGPAPIMS 508
P EL+++D+WGPAP+ S
Sbjct: 60 TYLPFELIYSDLWGPAPVCS 1
>AV769206
Length = 536
Score = 75.9 bits (185), Expect = 4e-14
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = -3
Query: 664 LKPYNQHKLQFHTTRCVFLGYSNSHKGYKCLNSHGRTFISRHVIFNEDLFPFHEGFLNTR 723
L+PYN KL H+ CVF+GYS +HKGYKCL+ GR +IS+ V+F+E FP+ F
Sbjct: 531 LRPYNSTKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPSLF---- 364
Query: 724 SPLKTTINNPSTSFPL 739
P +TT + + FPL
Sbjct: 363 -PDETTSSTSAEFFPL 319
>BP033602
Length = 533
Score = 75.5 bits (184), Expect = 5e-14
Identities = 46/126 (36%), Positives = 62/126 (48%), Gaps = 10/126 (7%)
Frame = +3
Query: 406 KVILKGLLKNGLYQLSDTKGNPYA-------FVSVKES---WHRRLGHPNNKVLDKVLKS 455
K+I +K+GLY DT N A SV++ WH RLGHPN + L +
Sbjct: 156 KMIGSAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYLRHLFPD 335
Query: 456 CNVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMSSSGFKYY 515
V S CE+C K P+ S HA P L+H+DVWGP+ I + G +++
Sbjct: 336 LFKNVNCSS--LECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQFGKRWF 509
Query: 516 VHFIDD 521
V FIDD
Sbjct: 510 VTFIDD 527
>BI418295
Length = 523
Score = 73.6 bits (179), Expect = 2e-13
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
Frame = +2
Query: 28 WKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDS-SKSNNPAFEEWQANDQRLLGWMLNS 86
W+ V ++ +L +++ + P+ F+T D + + NPA+ W D + W+L +
Sbjct: 14 WRQQVEGAIQSHQLHDFLVDPE-IPQRFLTEEDRVAATENPAYTTWIKQDSMVFTWLLTT 190
Query: 87 MATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKFQFHSIRKGEMKMEDYLIKMKN 146
++ + +++CE S Q+W E R+Q L+ + +I KG + +YL ++K
Sbjct: 191 LSPFVLPTVINCERSSQVWREILDFFENQCRAQSAKLRSELKNITKGSKSITEYLRRIKT 370
Query: 147 LADKLKLAGNPISNSNLIIQTLNGLDSEYNPIVVKLSDHTTLSWV 191
+ + L G P+S + + +GL +Y+ + + H + S +
Sbjct: 371 IVNTLVSIGEPVSFRDHLEAIFDGLPEDYSALSTIIFTHASSSTI 505
>BP043850
Length = 515
Score = 72.4 bits (176), Expect = 4e-13
Identities = 39/99 (39%), Positives = 58/99 (58%)
Frame = -1
Query: 1249 AEIAWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQN 1308
+EI W+ LL EL + L DN SA +A+NPV H ++HIE+D H +R+ +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1309 KVVVAYVPTTDQIADCLTKPLSHTRFSQLRDKLGVIHSP 1347
+ + +V T+ QIAD LTK L+ R + L KL ++ SP
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVESP 219
>AV424544
Length = 276
Score = 67.8 bits (164), Expect = 1e-11
Identities = 34/81 (41%), Positives = 49/81 (59%)
Frame = +3
Query: 1009 GFQNTKSDPSLFLLKGKDHITFLLIYVDDIIVTGSSNNFLQAFIKQLNDVFSLKDLGRLH 1068
G+ + D SLF T +L+YVDD+I+ G+ N +Q +L+ F +KDLG L
Sbjct: 33 GYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTLK 212
Query: 1069 YFLGIEVQRDASGMYLKQSKY 1089
YFLG+EV R + G++L Q KY
Sbjct: 213 YFLGLEVARSSCGLFLSQRKY 275
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 65.9 bits (159), Expect = 4e-11
Identities = 43/150 (28%), Positives = 77/150 (50%), Gaps = 10/150 (6%)
Frame = +2
Query: 998 FDSLKTALLNWGFQNTKSDPSLFLLKGKDH-ITFLLIYVDDIIVTGSSNNFLQAFIKQLN 1056
FDS +++ G+ SD + + D+ LL+YVDD++V G + + +Q QL
Sbjct: 2 FDSF---IMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLA 172
Query: 1057 DVFSLKDLGRLHYFLGIEVQRDASG--MYLKQSKYIGDLLKKFKMENASPCPTPMITGRH 1114
F +KDLG + LG+++ RD ++L Q Y+ +L++F M++ +P TP+
Sbjct: 173 REFDMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYK 352
Query: 1115 F------TVEGEKLKDPTV-FRQAIGGLQY 1137
+ E E+++ V + A+G L Y
Sbjct: 353 LSSSMIPSSEAERMEMSRVPYASAVGSLMY 442
>BP030371
Length = 516
Score = 62.8 bits (151), Expect = 4e-10
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Frame = -2
Query: 139 DYLIKMKNLADKLKLAGNPISNSNLIIQTLNGLDSEYNPIV--VKLSDH-TTLSWVDLQA 195
+YL+ +K++ D + G+P+S L G ++Y +V + +SD LS ++++
Sbjct: 503 EYLM*IKSITDPPRSIGDPVSAKEQAEIILEGFPTKYESLVNLIHMSDKFQALSLDEIES 324
Query: 196 QLLTFESRIEQLNT-LTNLNLNATANVANKFDHRDNRF------NSNNNWRG-SNFRGWR 247
L E+RIE LT + +N T + N+ N + ++ + G SNF G R
Sbjct: 323 LLRDQEARIECYRKFLTEI*VNLT*TLENQGSSSANTYAPAPVHSAEASHDGYSNFNGKR 144
Query: 248 -GGRGRGRSSKAPCQVYGKTNHTAINCFHRFDKNY 281
GG+G GR CQV T HTA C+HRFDK +
Sbjct: 143 CGGKG*GRGYGVQCQVCLPTGHTASVCYHRFDKTF 39
>AV779281
Length = 505
Score = 62.8 bits (151), Expect = 4e-10
Identities = 35/131 (26%), Positives = 65/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 20 LDRNNYPLWKSLVLPVVRGCKLDGYMLGTKKCPEEFITSSDSSKS-NNPAFEEWQANDQR 78
L+ N+ WK V +VR + + L P F++ D + NPA++ W+ D
Sbjct: 103 LEDTNFLSWKQHVEGIVRTHRWQSF-LDHPDVPPRFLSDEDRVNAVENPAYQLWEQQDSA 279
Query: 79 LLGWMLNSMATEMATQLLHCETSKQLWDEAQSLAGAHTRSQIIYLKFQFHSIRKGEMKME 138
L W+L+S++ + +++C S Q+ + AH+ +Q L+ + SI KG
Sbjct: 280 LFTWLLSSLSPTVLPTVVNCSQSWQVREAVLDFFKAHSFAQSTQLRSELRSIAKGSKTCS 459
Query: 139 DYLIKMKNLAD 149
DYL ++K++ +
Sbjct: 460 DYLKRIKSIVN 492
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 62.0 bits (149), Expect = 6e-10
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +3
Query: 1250 EIAWIHSLLFELKLPLPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNK 1309
E W+ L +L++ +++CDN SA LA+N V H R+++IEID H + +VL
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1310 VVVAYVPTTDQIADCLTKPLS 1330
+ + +VP++DQ+AD TK +S
Sbjct: 201 LHLLHVPSSDQVADVFTKTIS 263
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,877,985
Number of Sequences: 28460
Number of extensions: 374175
Number of successful extensions: 2132
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of query: 1349
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1248
effective length of database: 2,023,140
effective search space: 2524878720
effective search space used: 2524878720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146790.9