TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146790.4 - phase: 0 
         (147 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU251908                                                               30  0.13
TC8007 similar to UP|RERA_ARATH (O48670) RER1A protein (AtRER1A)...    29  0.29
TC11242 similar to UP|Q42795 (Q42795) Beta-amylase  (1,4-alpha-D...    27  1.4
TC8931 similar to GB|AAL09731.1|15982767|AY057490 At2g32240/F22D...    27  1.9
AV776813                                                               26  2.4
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1...    26  3.2
BP074539                                                               26  3.2
TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-li...    25  7.1
TC14475                                                                24  9.3

>AU251908 
          Length = 308

 Score = 30.4 bits (67), Expect = 0.13
 Identities = 16/43 (37%), Positives = 22/43 (50%)
 Frame = -2

Query: 54  TWTIDVRKETIANCFRHCKIRSASDVVGNLDESTFDEETQDLQ 96
           TW ID+RK+ I  C           +VGN  +S  + E +DLQ
Sbjct: 127 TWGIDLRKKKICGC---------GKIVGNCFQSRVELEAEDLQ 26


>TC8007 similar to UP|RERA_ARATH (O48670) RER1A protein (AtRER1A), partial
            (83%)
          Length = 1132

 Score = 29.3 bits (64), Expect = 0.29
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 37   SDPGKINVLDAINLAIPTWTIDVRKET 63
            S  G +N+L  I  AI  WTID+RK T
Sbjct: 1027 SSSGSLNILSLI--AIVNWTIDIRKST 1101


>TC11242 similar to UP|Q42795 (Q42795) Beta-amylase  (1,4-alpha-D-glucan
           maltohydrolase) , partial (51%)
          Length = 821

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = +3

Query: 43  NVLDAINLAIPTWTIDV 59
           NV DA+N+ IP W +D+
Sbjct: 342 NVGDAVNIPIPQWVLDI 392


>TC8931 similar to GB|AAL09731.1|15982767|AY057490 At2g32240/F22D22.1
           {Arabidopsis thaliana;} , partial (4%)
          Length = 876

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 9/26 (34%), Positives = 17/26 (64%)
 Frame = -2

Query: 98  MINQCGYRNKMDIDNLMNYPGENEAC 123
           ++N+ GY+NK++  N+MN   +   C
Sbjct: 590 IVNKKGYKNKIEKPNMMNNKTKKSCC 513


>AV776813 
          Length = 276

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 26 RKILEGYEVGQSD-PGKINVLDAINLAIPTWTIDVRKETIANCFR 69
          +KIL+ Y  G+ +  GK+          PTW  D+RK    N F+
Sbjct: 33 QKILQPYSRGRRELKGKLQDCFKATKPTPTWRKDIRKRPH*NLFK 167


>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
           (Forkhead-related protein FKHL2) (Transcription factor
           BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
          Length = 1032

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +1

Query: 60  RKETIANCFRHCKIRSASDVVGNLDESTFDEE 91
           R E I  C  HC++  A + +  L   ++DEE
Sbjct: 310 RLEEIDACSAHCEVNIAQEWLEKLPPRSYDEE 405


>BP074539 
          Length = 357

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +1

Query: 13  IRAFKMHYRRRFYRKILEGYEVGQSDPGKINVLDAINL 50
           +R   MH+ +    ++L  + VGQ     I  LD +NL
Sbjct: 184 VRKMPMHFGKLKNLQVLNSFFVGQGSEYNIQQLDELNL 297


>TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-like protein,
           complete
          Length = 2423

 Score = 24.6 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = +1

Query: 41  KINVLDAINLAIPTWTIDVRKE 62
           ++N+LD I +    W + VRKE
Sbjct: 880 RVNLLDTIGVQFEQWNLLVRKE 945


>TC14475 
          Length = 634

 Score = 24.3 bits (51), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 49 NLAIPTWTIDVRKETIANCFRHCK 72
          N+ +  WT  V+ + +A+C   CK
Sbjct: 76 NVKLCGWTFKVKHQLVASCTNMCK 147


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,299,316
Number of Sequences: 28460
Number of extensions: 23954
Number of successful extensions: 109
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of query: 147
length of database: 4,897,600
effective HSP length: 82
effective length of query: 65
effective length of database: 2,563,880
effective search space: 166652200
effective search space used: 166652200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)