BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.3 + phase: 0 /pseudo
(1363 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 171 6e-43
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 127 9e-30
AV780705 120 2e-27
AU251850 107 2e-23
AV411435 106 3e-23
CN825238 92 6e-19
BP060613 90 3e-18
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 89 4e-18
TC9793 84 1e-16
AV767121 79 4e-15
BP053577 67 2e-11
AV780221 65 6e-11
TC12829 65 9e-11
BP080049 60 2e-09
BE122611 47 2e-09
AV426428 59 4e-09
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 59 5e-09
AV428268 57 2e-08
AU089037 55 1e-07
BP049917 55 1e-07
>TC18710
Length = 843
Score = 171 bits (434), Expect = 6e-43
Identities = 89/210 (42%), Positives = 122/210 (57%)
Frame = +2
Query: 458 GPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRP 517
G DG+ LF+QK +V V L L + IN+T + LIPK +P S NQFRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367
Query: 518 ISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLITDNAIIAMECFHWMKKKTKG 577
IS C + K+++K RLK +P+++ QS F+QGR I DN +I E FH + +
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547
Query: 578 KKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQCISTVSYQILINGQPSRR 637
+ +KLDM KAYDR+EW F++S L + F N + I+ +S VSY ING +
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727
Query: 638 FFPERGLRQGDPLSPYLFILCANVLSGLLK 667
P+RGLRQGDP SPYLF+ VLS L++
Sbjct: 728 LLPQRGLRQGDPFSPYLFLFTMEVLSLLIQ 817
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 127 bits (320), Expect = 9e-30
Identities = 75/188 (39%), Positives = 109/188 (57%), Gaps = 5/188 (2%)
Frame = -3
Query: 356 LKEGDKNSKFFHAKAKQRGKINSIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTT 415
LK GD N++FFHA QR N I KIKD G+W G+ KV + V+YF+ +++SS P
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS-PLQ 402
Query: 416 VDQTCL-----VVKDRLSPEHVEWCNRSFSPAEIKDAIDQMHPLKAPGPDGLPALFFQKY 470
+ CL +V DRL+ + S EIK+A+ M LKAPG DG+ LF+Q+
Sbjct: 401 YLRECLAPIPKLVTDRLNHKLCA----QVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQN 234
Query: 471 WYIVGSEVVSLALGILNEGKSTECINKTFIALIPKCKNPSSPNQFRPISLCNVVMKIVTK 530
IV ++V + L + G+ +N+T + LIPK + + QFRPIS C+ + K+++K
Sbjct: 233 REIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISK 54
Query: 531 TIANRLKP 538
I RLKP
Sbjct: 53 IIVARLKP 30
>AV780705
Length = 524
Score = 120 bits (300), Expect = 2e-27
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Frame = -2
Query: 761 YLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYK 820
YLGLP I+GR+K +++E+V +K++GWKE L++AGKE LIKA+ QAIP+Y M+
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 821 LPEGCCDAVEGMLAKFWWASD-----EYKRKIHWMRWGRLGE----TKKRGGLGFRSFSD 871
P+ C+++ ++A FWW S EY G +G +K++GG+GFR
Sbjct: 304 FPKTFCNSLYALVADFWWKSQGEGAVEYT--------GAVGTK*PLSKEKGGVGFRDLRT 149
Query: 872 FNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWR 920
N A L +Q WR+L + +L ++KS YFP ++ + + WR
Sbjct: 148 QNLAFLARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWDGTHPWMWR 2
>AU251850
Length = 343
Score = 107 bits (266), Expect = 2e-23
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +2
Query: 1 PTPMKLLSWNCRGLGNPRAIRALLRLIRIQNPQVVFLMETRLKSDEMERVRINCGFSSGL 60
PT MKLLSWNCRGLG+PRA+ AL RL+R + PQ+VFLMET+LK E E++ + G S+ L
Sbjct: 29 PTAMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISLGFGLSNCL 208
Query: 61 FVPCDGFGKERACDIALLWMDSVNLSIRSYSLNHIM 96
V C G KER +A+ W SV++S+ S+S NHI+
Sbjct: 209 IVDCVGDEKERKGGLAMWWNASVDVSLVSFSGNHIV 316
>AV411435
Length = 426
Score = 106 bits (264), Expect = 3e-23
Identities = 49/126 (38%), Positives = 72/126 (56%), Gaps = 2/126 (1%)
Frame = +3
Query: 1000 ILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHLL--CENKSKEVAESSSVRGSDIWKQIW 1057
I+ P S +D++ W + SGEYSV+SG+ + + +A SSS S +W IW
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182
Query: 1058 NFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAV 1117
P+ ++FLWR A+N +P + NL ++ + D CP+CN G ED+NH L C +AV
Sbjct: 183 GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362
Query: 1118 WFSSPL 1123
WF PL
Sbjct: 363 WFGCPL 380
>CN825238
Length = 692
Score = 92.0 bits (227), Expect = 6e-19
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = +3
Query: 973 ADLIVHETRSWDRERIMASFNSFIAKKILSIPISFRLPDDKVTWQWEKSGEYSVRSGHHL 1032
A L++ R W+ + I F A I SIP+ +R + W+W ++G +SVRS ++
Sbjct: 291 AILLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYN 470
Query: 1033 LCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGISLDQ 1092
+ +KE+ SSS S WK++W P ++F +R+A NI+P R NL ++GI++
Sbjct: 471 I--QVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQN 644
Query: 1093 SCPLCNSGL-EDLNHL 1107
CP CN + E ++HL
Sbjct: 645 ECPTCNHQIPESMSHL 692
>BP060613
Length = 378
Score = 89.7 bits (221), Expect = 3e-18
Identities = 44/108 (40%), Positives = 61/108 (55%)
Frame = +1
Query: 837 WWASDEYKRKIHWMRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSIL 896
WW+S + R +HW +W L E K GGLGF+ F N+ALL KQ WR+L + ++L IL
Sbjct: 46 WWSS-KGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 897 KSRYFPRTSISITKVGFQPRYAWRSLMKARELVENDAHWVIGNGRTVR 944
K+ YFP T + W SL+ REL+ W +G+G TV+
Sbjct: 223 KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 89.4 bits (220), Expect = 4e-18
Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Frame = -3
Query: 266 CEAMVRGSWNNATGLASK-IEAMQSLDSKFKEYIT-------SEIRKELLEIETQLNNHA 317
C+ ++ +W+N + AS + + K +T S KE+ E++ QL +
Sbjct: 525 CKETIKKAWDNTSETASSHCSNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQ 346
Query: 318 SWDGSPDNITKFRELEAKHSELLQTEETMWRQRSRATWLKEGDKNSKFFHAKAKQRGKIN 377
++ S ++ + ++ + + +L + EE W QRSR WLK GDKN+KFFHA QR + N
Sbjct: 345 NYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERN 166
Query: 378 SIKKIKDDRGVWWNGRDKVEKVLVDYFAGLFTSSNPTTVDQTCL 421
I++IKD +G W + + + + D++ ++ S+N + + CL
Sbjct: 165 RIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITE-CL 37
>TC9793
Length = 568
Score = 84.3 bits (207), Expect = 1e-16
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +2
Query: 1204 APTR--WCPPQTGTVKINVDAGVFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAE 1261
AP R W PP G +K+N+DAG STG+ VAR H+ +L +AT EE + P +AE
Sbjct: 44 APRRMVWEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAATHLEETQIEPTLAE 223
Query: 1262 RLALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSV 1321
LALRWCLS + + + +E+ + V++ L ++ K IE ++ D + + F+ +
Sbjct: 224 ALALRWCLSMIKEMEMERIIVESYSLVVLNTLHQKTKRPDIELVVYDSRELAAEFNFINF 403
Query: 1322 NFAGR 1326
GR
Sbjct: 404 KHIGR 418
>AV767121
Length = 525
Score = 79.3 bits (194), Expect = 4e-15
Identities = 39/110 (35%), Positives = 65/110 (58%)
Frame = +2
Query: 790 WKEKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHW 849
WK+K +S G+ LI++V A+P + +S +KLP G + ++ F W E + KI
Sbjct: 11 WKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENKIA* 190
Query: 850 MRWGRLGETKKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSR 899
++W + + K+ GGLG + FNKALLGK WR L + +SL +++++
Sbjct: 191 VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQ 340
>BP053577
Length = 463
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 1228 GSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQFTSLCIETDAE 1287
G G G VAR+ G V+ SA + +PL+AE L LRW + A F + +ETD
Sbjct: 6 GIAGLGMVARNCDGEVMASACSSPVSISSPLLAEALGLRWTMQLATDLGFRRITLETDCL 185
Query: 1288 QVVHCLLRRKK-IAAIEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSLVGLAKTVGNIC 1346
Q+ + +++ + + +I DC +S F SV+F R+ N VA L + T N+
Sbjct: 186 QLFNTWRSQEEGRSYLSSIISDCRILISAFDYVSVSFVRRTGNTVADFLARNSDTYANMV 365
Query: 1347 WVGSVP 1352
WV VP
Sbjct: 366 WVEEVP 383
>AV780221
Length = 461
Score = 65.5 bits (158), Expect = 6e-11
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +3
Query: 803 LIKAVAQAIPNYIMSCYKLPEG-CCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETKKR 861
LI++V A+P + + +KLP G V F+ E +KI W++W + K
Sbjct: 9 LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188
Query: 862 GGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSILKSRYFPRTSISITKVGFQPRYAWRS 921
GGLG ++ FNKALLGK WR+L + + L +L +Y + +I Q +W +
Sbjct: 189 GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY--KNAIP------QSASSWWN 344
Query: 922 LMKARELVENDAHWV-------IGNGRTVRIFKDNWI 951
+ + + W+ IG G V+ + +NW+
Sbjct: 345 DLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455
>TC12829
Length = 448
Score = 64.7 bits (156), Expect = 9e-11
Identities = 33/63 (52%), Positives = 43/63 (67%), Gaps = 4/63 (6%)
Frame = +3
Query: 792 EKCLSRAGKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFW--W--ASDEYKRKI 847
EK L RAG+E LIK+V +AIP YIMSC+ LP+ C +EGM+ KF+ W S+EY +
Sbjct: 252 EKFLYRAGREVLIKSVTKAIPTYIMSCFALPDSICSQIEGMVGKFYLEW*CVSEEY--SL 425
Query: 848 HWM 850
WM
Sbjct: 426 AWM 434
Score = 30.4 bits (67), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 829 VEGMLAKFWWASDEYKRKIHWMRWGRL 855
++ L F W+ D +R IHW+ W +L
Sbjct: 364 LKAWLVSFIWSGDVSRRSIHWLGWKKL 444
>BP080049
Length = 356
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/94 (34%), Positives = 48/94 (51%)
Frame = -1
Query: 1263 LALRWCLSWAEGEQFTSLCIETDAEQVVHCLLRRKKIAAIEFLILDCLDYLSRFSTCSVN 1322
L+LRW L A F + ETD + RR + ++ LILDC + LS F ++
Sbjct: 356 LSLRWALGLASELGFR*IVFETDCLHLYEAWKRRGGCSVLDTLILDCRNLLSYFDVFQLS 177
Query: 1323 FAGRSCNQVAHSLVGLAKTVGNICWVGSVPQQIY 1356
F R+ N V +L L +GN+ WV +P ++Y
Sbjct: 176 FVRRTSNCVVDALAKLCFQLGNVVWVEELPHELY 75
>BE122611
Length = 357
Score = 46.6 bits (109), Expect(2) = 2e-09
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -3
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWR 1071
D++ W E +G YS +S ++LL E+ E S W +W N P + FLW
Sbjct: 331 DRILWTEESNGCYSAKSTYNLLIEDGGNE---------SRFWSLVWKANAPEKVRFFLWL 179
Query: 1072 LASNILPT 1079
+ N LP+
Sbjct: 178 VGRNALPS 155
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 14/51 (27%), Positives = 24/51 (46%)
Frame = -2
Query: 1080 RCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPPN 1130
+C + ++ +C C + ED NH+F CP + +W I + PN
Sbjct: 155 QCKKAPYHLASSAACIRCGAPSEDANHVFRWCPGSAWMWTQFSRSIALVPN 3
>AV426428
Length = 413
Score = 59.3 bits (142), Expect = 4e-09
Identities = 27/100 (27%), Positives = 49/100 (49%)
Frame = +3
Query: 1070 WRLASNILPTRCNLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIPP 1129
WR +LP + +L +G++ D CP C + + +H L CP +WF+S LG +
Sbjct: 96 WRACLGVLPVKASLHARGLAEDPICPRCLAAPKTADHAVLFCP*VHPIWFASSLGFRLNQ 275
Query: 1130 NSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFK 1169
E++ +++ D F L+ +W +N+L F+
Sbjct: 276 ECKMHEFVADFMQVAD*DTCGEFLTILYAIWTAQNELCFR 395
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 58.9 bits (141), Expect = 5e-09
Identities = 56/195 (28%), Positives = 82/195 (41%), Gaps = 22/195 (11%)
Frame = -3
Query: 1118 WFSSPLGIHIPPNSMCREWMELW------------LKKDDPLAVQVFGITLWRLWQGRNQ 1165
WF SPL I P R + W L ++ LA F TLW +W+ RN+
Sbjct: 1116 WFGSPLQWSIEPGGNLR--FDRWFVERSQFILNHSLNHEEDLATLSF--TLWAIWKNRNR 949
Query: 1166 LIFK-------NSPFDPALIAQSAVLL--VEEFNLANRKAACHPISRAPTRWCPPQTGTV 1216
+IF+ N+ F + Q A L+ + R+ + S W PP G
Sbjct: 948 VIFQLEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTRERNINVTSARDRSWRPPPLGVY 769
Query: 1217 KINVDAG-VFTDGSTGWGFVARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGE 1275
K+N DA S G V RD+ G +L S T + +P+V+E LALR L A
Sbjct: 768 KLNSDASWKAPSPSCTVGVVIRDNLG-LLISGTASRPLAPSPIVSEALALREGLILARSL 592
Query: 1276 QFTSLCIETDAEQVV 1290
+ E+D + ++
Sbjct: 591 GLDRILSESDCQPLI 547
>AV428268
Length = 429
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Frame = +3
Query: 1024 YSVRSGHHLL--CENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRC 1081
YSV+S + L C N + +I+K +W+ P +A W++ N + T+
Sbjct: 6 YSVKSAYDFLHGCAN----------AQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKV 155
Query: 1082 NLSKKGISLDQSCPLCNSGLEDLNHLFLHCPAAKAVW--FSSPLGI-HIPPNSMCREWME 1138
NL+++G+ + CPLC+ E +HL CP +W S G+ + PN +++
Sbjct: 156 NLNRRGVVISNVCPLCSLDEESTDHLLFSCPIV*RIWSKISE*FGVFSVFPNDSHGHFLQ 335
Query: 1139 LWLKKDDPLAVQVFGITLW-----RLWQGRN 1164
L L + G +W +WQGRN
Sbjct: 336 -HLGSCGSLNFRKRGWFVWIAAVVCIWQGRN 425
>AU089037
Length = 245
Score = 54.7 bits (130), Expect = 1e-07
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = -1
Query: 1044 SSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGI---SLDQSCPLCNSG 1100
S V SDI++++W P +A +F WRL + + TR NL ++ + S + CP+C+
Sbjct: 227 SIQVPSSDIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQC 48
Query: 1101 LEDLNHLFLHCPAA 1114
E +HLF CP A
Sbjct: 47 EESSSHLFFSCPLA 6
>BP049917
Length = 480
Score = 54.7 bits (130), Expect = 1e-07
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Frame = -2
Query: 1219 NVDAGVFTDGSTGWGF--VARDHHGAVLFSATRKEEMMVTPLVAERLALRWCLSWAEGEQ 1276
NVDA + + WG V R+H G V+ + T+ + P AE A+++ +S+A
Sbjct: 473 NVDA---LEVGSDWGLXVVVRNHFGNVVAAGTKPLTADLGPEYAEACAIKFGVSFAVEHG 303
Query: 1277 FTSLCIETDAEQVVHCLLRRKKIAA-IEFLILDCLDYLSRFSTCSVNFAGRSCNQVAHSL 1335
F + +E++ + VV + R + + +++ D ++ F + +V GR + VAH L
Sbjct: 302 FNAAIVESNCQVVVDTIARGGTHGSYLGYILADIINLGVHFQSFTVIHVGRKAHVVAHDL 123
Query: 1336 VGLAKTVGNICWVGSVPQQIYPSLCKD 1362
A + N WVG V I P + KD
Sbjct: 122 SKFALSHANCTWVG-VTHCIQPCVLKD 45
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,461,011
Number of Sequences: 28460
Number of extensions: 421433
Number of successful extensions: 2113
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2098
length of query: 1363
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1262
effective length of database: 2,023,140
effective search space: 2553202680
effective search space used: 2553202680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146790.3