BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.2 + phase: 0
(255 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%) 343 2e-95
TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial... 320 1e-88
AV417335 279 3e-76
TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, part... 273 2e-74
TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%) 177 6e-73
TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial... 258 7e-70
TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 ... 223 3e-59
BP031258 219 4e-58
TC19660 similar to GB|BAB09383.1|9758857|AB010694 expansin-like ... 163 3e-46
AU251791 179 4e-46
BI418390 171 1e-43
TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, part... 161 1e-40
AV774298 104 1e-33
BP041103 118 9e-28
TC15301 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 prec... 118 1e-27
TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%) 110 3e-25
TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 prec... 101 1e-22
AV411807 96 6e-21
TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precu... 75 1e-14
TC8270 similar to UP|Q7XHJ2 (Q7XHJ2) Expansin-like protein (Frag... 65 1e-11
>TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%)
Length = 1313
Score = 343 bits (879), Expect = 2e-95
Identities = 157/249 (63%), Positives = 190/249 (76%)
Frame = +2
Query: 2 TKVMFILGTLIGLCCFTINSYAFKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYG 61
T + ++ L+ LC +Y GW HATFYGG DA GTMGGACGYGNLYSQGYG
Sbjct: 95 TSAISLIFFLLNLCLR--GTYGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYG 268
Query: 62 TRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGG 121
T TAALSTALFN+G SCG CY++ CD +DPRWC+ G SI +TATNFCPPN+ L N +GG
Sbjct: 269 TNTAALSTALFNNGLSCGSCYEMRCD--SDPRWCLPG-SILVTATNFCPPNYALSNSNGG 439
Query: 122 WCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNL 181
WCNPPL+HFD+A+PA+ KI Y+ GIVP+ F+RV C K GG+RF++NG YF LVL++N+
Sbjct: 440 WCNPPLQHFDLAEPAFLKIAQYKAGIVPISFRRVSCVKKGGIRFTINGHSYFNLVLVTNV 619
Query: 182 AGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVPS 241
GAG + SVSIKGSKT W MSRNWG NWQSN+YLNGQS+SFKVTT+DG T + VP+
Sbjct: 620 GGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTIISNNAVPA 799
Query: 242 NWGFGQSFS 250
W FGQ+FS
Sbjct: 800 GWQFGQTFS 826
>TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial (92%)
Length = 1277
Score = 320 bits (820), Expect = 1e-88
Identities = 147/230 (63%), Positives = 177/230 (76%), Gaps = 1/230 (0%)
Frame = +1
Query: 24 FKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYK 83
+ W +AHATFYGGSDA GTMGGACGYGNLYSQGYG TAALSTALFN+G SCG C++
Sbjct: 124 YTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFE 303
Query: 84 IICDYKTDPRWCIKGR-SITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGI 142
I CD DPRWC G SI +TATNFCPPN P+DDGGWCNPP HFD+A P + KI
Sbjct: 304 IKCDQ--DPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLAMPMFLKIAQ 477
Query: 143 YRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAM 202
YR GIVPV ++RVPC+K GG+RF++NG YF LVLISN+AGAG I VS+KG+ + W +M
Sbjct: 478 YRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGTNSGWNSM 657
Query: 203 SRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVPSNWGFGQSFSSK 252
SRNWG NWQSN+ L GQ++SF+VT +D T T ++ PS+W FGQ+F+ K
Sbjct: 658 SRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGK 807
>AV417335
Length = 428
Score = 279 bits (714), Expect = 3e-76
Identities = 124/142 (87%), Positives = 135/142 (94%)
Frame = +3
Query: 105 ATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVR 164
ATNFCPPNF LPN++GGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVR
Sbjct: 3 ATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVR 182
Query: 165 FSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFK 224
FSVNGRDYFELV+ISN+AGAGSIQSVSIKGSKT W++MSRNWGANWQSNA+LNGQS+SF+
Sbjct: 183 FSVNGRDYFELVMISNVAGAGSIQSVSIKGSKTGWLSMSRNWGANWQSNAFLNGQSLSFR 362
Query: 225 VTTTDGVTRTFQDIVPSNWGFG 246
+TTTDG TR F D+VP NW FG
Sbjct: 363 ITTTDGETRVFPDVVPGNWAFG 428
>TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, partial (78%)
Length = 606
Score = 273 bits (699), Expect = 2e-74
Identities = 125/201 (62%), Positives = 155/201 (76%), Gaps = 1/201 (0%)
Frame = +2
Query: 53 GNLYSQGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGR-SITITATNFCPP 111
GNLY+QGYG TAALSTALFN+G SCG C+++ CD DPRWC G SI +TATNFCPP
Sbjct: 2 GNLYTQGYGVNTAALSTALFNNGLSCGACFEMKCDQ--DPRWCNPGNPSILVTATNFCPP 175
Query: 112 NFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRD 171
NF P+D+GGWCNPP HFD+A P + KI YR GIVPV ++RVPC+K GG+RF++NG
Sbjct: 176 NFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKSGGIRFTINGFR 355
Query: 172 YFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGV 231
YF LVLI+N+AGAG I VS+KG T WM+MSRNWG NWQSN+ L GQ++SF+VT +D
Sbjct: 356 YFNLVLITNVAGAGDIVRVSVKGGNTAWMSMSRNWGQNWQSNSVLVGQTLSFRVTGSDRR 535
Query: 232 TRTFQDIVPSNWGFGQSFSSK 252
T T ++ P+NW FGQ+F+ K
Sbjct: 536 TSTSWNVAPANWQFGQTFTGK 598
>TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%)
Length = 687
Score = 177 bits (450), Expect(2) = 6e-73
Identities = 85/144 (59%), Positives = 102/144 (70%)
Frame = +1
Query: 12 IGLCCFTINSYAFKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTAL 71
+G+ F + + GWTNAHATFYGGSDA GTMGGACGYGNL SQGYGT TAALSTAL
Sbjct: 31 LGIFSFVSHVNGYGDGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNTAALSTAL 210
Query: 72 FNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWCNPPLKHFD 131
FN G SCG C++I C DP+WC+ G SI +TATN CPP GG C+PP HFD
Sbjct: 211 FNSGLSCGACFQIKC--VNDPQWCLPG-SIVVTATNVCPP--------GGGCDPPNHHFD 357
Query: 132 MAQPAWEKIGIYRGGIVPVLFQRV 155
++QP ++ I Y+ GIVPV ++RV
Sbjct: 358 LSQPIFQHIAQYKAGIVPVAYRRV 429
Score = 112 bits (281), Expect(2) = 6e-73
Identities = 47/84 (55%), Positives = 66/84 (77%)
Frame = +2
Query: 157 CKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYL 216
C++ G+RF++NG YF LVL++N+ GAG + +V+IKGS+T W AMSRNWG NWQSN+YL
Sbjct: 434 CRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYL 613
Query: 217 NGQSMSFKVTTTDGVTRTFQDIVP 240
NGQS+SF VTT++G + ++ P
Sbjct: 614 NGQSLSFVVTTSNGHSVVSFNVAP 685
>TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial (82%)
Length = 729
Score = 258 bits (659), Expect = 7e-70
Identities = 122/202 (60%), Positives = 156/202 (76%)
Frame = +2
Query: 4 VMFILGTLIGLCCFTINSYAFKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTR 63
+M ++G L+ L FT ++YA+ GWT+AHATFYGG DA GTMGGACGYGNLYSQGYGT
Sbjct: 86 LMALIGFLL-LTMFT-SAYAY-GGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTN 256
Query: 64 TAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWC 123
TAALSTA+FN+G SCG CY++ C D RWC+ G SI +TATNFCPPN LPN+ GGWC
Sbjct: 257 TAALSTAMFNNGLSCGSCYEVRC--VNDHRWCLPG-SIVVTATNFCPPNNALPNNAGGWC 427
Query: 124 NPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLAG 183
NPPL HFD+AQP + +I Y+ GIVPV ++RV C++ GG+RF++NG YF LVLI+N+ G
Sbjct: 428 NPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVACRRRGGIRFTINGHSYFNLVLITNVGG 607
Query: 184 AGSIQSVSIKGSKTDWMAMSRN 205
AG + S +IKGS+ +W+ + N
Sbjct: 608 AGDVHSAAIKGSR-NWVESNVN 670
Score = 55.5 bits (132), Expect = 9e-09
Identities = 22/31 (70%), Positives = 25/31 (79%)
Frame = +3
Query: 193 KGSKTDWMAMSRNWGANWQSNAYLNGQSMSF 223
KG +T W MS NWG NWQSN+YLNGQS+SF
Sbjct: 636 KGQETGWSPMSTNWGQNWQSNSYLNGQSLSF 728
>TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(60%)
Length = 648
Score = 223 bits (567), Expect = 3e-59
Identities = 100/152 (65%), Positives = 121/152 (78%), Gaps = 1/152 (0%)
Frame = +3
Query: 105 ATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVR 164
ATNFCPPN LPND+GGWCNPP HFDM+QPA+E I YR GIVP+ +RV C+K GG+R
Sbjct: 15 ATNFCPPNLALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPIFHRRVRCRKSGGIR 194
Query: 165 FSVNGRDYFELVLISNLAGAGSIQSVSIKGSK-TDWMAMSRNWGANWQSNAYLNGQSMSF 223
F++NGRDYFELVLISN+ GAG I V IKGSK + W MSRNWG NWQS +YLNGQS+SF
Sbjct: 195 FTINGRDYFELVLISNVGGAGEISMVWIKGSKMSSWETMSRNWGVNWQSLSYLNGQSLSF 374
Query: 224 KVTTTDGVTRTFQDIVPSNWGFGQSFSSKIQF 255
++ +G TRT ++ PS+W FGQSF+SK+QF
Sbjct: 375 RIQLRNGKTRTAYNVAPSSWKFGQSFTSKVQF 470
>BP031258
Length = 526
Score = 219 bits (558), Expect = 4e-58
Identities = 100/137 (72%), Positives = 113/137 (81%)
Frame = +1
Query: 28 GWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYKIICD 87
GW +AHATFYGG DA GTMGGACGYGNLYSQGYGT TAALSTALFN+G SCG CY++ CD
Sbjct: 124 GWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGSCYEMRCD 303
Query: 88 YKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGI 147
DPRWC G SI +TATNFCPPN L N++GGWCNPPL+HFDMA+PA+ +I YR GI
Sbjct: 304 --DDPRWCKPG-SIIVTATNFCPPNPSLANNNGGWCNPPLQHFDMAEPAFLQIAQYRAGI 474
Query: 148 VPVLFQRVPCKKHGGVR 164
VPV F+RVPC K GG+R
Sbjct: 475 VPVAFRRVPCAKKGGIR 525
>TC19660 similar to GB|BAB09383.1|9758857|AB010694 expansin-like protein
{Arabidopsis thaliana;} , partial (66%)
Length = 652
Score = 163 bits (412), Expect(2) = 3e-46
Identities = 79/154 (51%), Positives = 99/154 (63%), Gaps = 1/154 (0%)
Frame = +2
Query: 58 QGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGR-SITITATNFCPPNFDLP 116
QGYG T ALSTALFN+G +CG C +I C + WC K S+ +TATNFCPPN+
Sbjct: 200 QGYGLHTTALSTALFNNGLACGACIEIKC---VNSAWCRKDAPSVLVTATNFCPPNYT-- 364
Query: 117 NDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELV 176
G CNPP KHFD+ + KI YR G+VPV +RVPC K GGV+F + G YF +V
Sbjct: 365 KTVGVRCNPPQKHFDLTVFMFTKIAWYRAGVVPVQARRVPCHKIGGVKFEIKGNPYFLMV 544
Query: 177 LISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANW 210
L+ N+ AG + S+SIKGS T W+ M+ NWG W
Sbjct: 545 LVYNVGNAGDVSSMSIKGSNTGWLQMAHNWGQIW 646
Score = 38.1 bits (87), Expect(2) = 3e-46
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 28 GWTNAHATFYGGSDAEGTMGGACGYGNLY 56
G +A ATFYG GTM GACGYG+L+
Sbjct: 109 GGFDARATFYGDFKGIGTMQGACGYGDLW 195
>AU251791
Length = 343
Score = 179 bits (454), Expect = 4e-46
Identities = 76/113 (67%), Positives = 97/113 (85%)
Frame = +1
Query: 120 GGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLIS 179
GGWCNPPL+HFD++QPA+++I Y+ GIVPV ++RVPC+K GG+ F++NG YF LVLI+
Sbjct: 4 GGWCNPPLQHFDLSQPAFQQIAQYKAGIVPVAYRRVPCQKKGGISFTINGHSYFNLVLIT 183
Query: 180 NLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVT 232
N+ G+G +Q+VSIKGS+TDW MSRNWG NWQSNA LNGQS+SFKVTT+DG T
Sbjct: 184 NVGGSGDVQAVSIKGSRTDWQPMSRNWGQNWQSNANLNGQSLSFKVTTSDGRT 342
>BI418390
Length = 471
Score = 171 bits (432), Expect = 1e-43
Identities = 77/117 (65%), Positives = 87/117 (73%), Gaps = 1/117 (0%)
Frame = +1
Query: 24 FKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYK 83
+ W AHATFYGGSDA GTMGGACGYGNLYSQGYG TAALSTALFN+G SCG C++
Sbjct: 127 YPGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFE 306
Query: 84 IICDYKTDPRWCIKGR-SITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEK 139
+ C DP WC G SI +TATNFCPPNF +D+GGWCNPP HFD+A P + K
Sbjct: 307 LKC--ANDPSWCHAGSPSIFVTATNFCPPNFAQASDNGGWCNPPRPHFDLAMPMFLK 471
>TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, partial (50%)
Length = 898
Score = 161 bits (407), Expect = 1e-40
Identities = 73/128 (57%), Positives = 95/128 (74%)
Frame = +2
Query: 125 PPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLAGA 184
PP H D+A P + KI YR GIVPV ++RVPC+K GG+RF++NG YF LVLISN+AGA
Sbjct: 2 PPRPHSDLAMPMFLKIAEYRSGIVPVAYRRVPCRKPGGIRFTINGFRYFNLVLISNVAGA 181
Query: 185 GSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVPSNWG 244
G + +KG++T WM MSRNWG NWQSNA L GQ++SF+VT +D T T +I P++W
Sbjct: 182 GDVVRTYVKGTRTGWMPMSRNWGRNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPAHWQ 361
Query: 245 FGQSFSSK 252
FGQ+F+ K
Sbjct: 362 FGQTFTGK 385
>AV774298
Length = 482
Score = 104 bits (259), Expect(2) = 1e-33
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +2
Query: 75 GASCGQCYKIICDYKTDPRWCIKGR-SITITATNFCPPNFDLPNDDGGWCNPPLKHFDMA 133
G SCG C++I C D +WC G SI ITATNFCPPN+ LPND+GGWCNPP FD+A
Sbjct: 83 GLSCGACFEIKC--ANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPDFDLA 256
Query: 134 QPAWEKIGIYRGGIVPVLFQR 154
P + KI YR GIVPV ++R
Sbjct: 257 MPMFLKIAEYRAGIVPVAYRR 319
Score = 55.1 bits (131), Expect(2) = 1e-33
Identities = 24/27 (88%), Positives = 25/27 (91%)
Frame = +1
Query: 48 GACGYGNLYSQGYGTRTAALSTALFND 74
GACGYGNLYSQGYG TAALSTALFN+
Sbjct: 1 GACGYGNLYSQGYGVNTAALSTALFNE 81
>BP041103
Length = 531
Score = 118 bits (296), Expect = 9e-28
Identities = 51/99 (51%), Positives = 68/99 (68%)
Frame = -1
Query: 154 RVPCKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSN 213
RV C++ GG+RF+++G F VLISN AG G I +V KGS+T W+ M RNWG NW N
Sbjct: 531 RVKCRREGGIRFTISGSGIFISVLISNAAGMGDIVAVKTKGSRTGWLPMGRNWGQNWHLN 352
Query: 214 AYLNGQSMSFKVTTTDGVTRTFQDIVPSNWGFGQSFSSK 252
A L Q +SF+VT++DG+T T ++ P NW FGQ+F K
Sbjct: 351 ALLQNQPLSFEVTSSDGITLTCYNVAPKNWSFGQTFEGK 235
>TC15301 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (45%)
Length = 507
Score = 118 bits (295), Expect = 1e-27
Identities = 52/104 (50%), Positives = 64/104 (61%)
Frame = +1
Query: 27 SGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYKIIC 86
S W +A AT+Y +D +GGACGYG+L GYG TA LS LF G CG C+++ C
Sbjct: 187 SEWRSARATYYAAADPRDAVGGACGYGDLLKTGYGMATAGLSETLFERGQICGACFELRC 366
Query: 87 DYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWCNPPLKHF 130
D RWC+ G SI +TATNFC PN+ + GG CNPP HF
Sbjct: 367 --VEDSRWCLPGTSIIVTATNFCAPNYGFTAEGGGHCNPPNNHF 492
>TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%)
Length = 629
Score = 110 bits (274), Expect = 3e-25
Identities = 51/81 (62%), Positives = 63/81 (76%)
Frame = +1
Query: 172 YFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGV 231
YF LVLI+N+AGAG I S+KGS T WM+MSRNWG NWQSN+ L GQS+SF+VT +D
Sbjct: 1 YFNLVLITNVAGAGDIVRTSVKGSDTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 180
Query: 232 TRTFQDIVPSNWGFGQSFSSK 252
T T +IVPS+W FGQ+F+ K
Sbjct: 181 TSTSLNIVPSHWQFGQTFTGK 243
>TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (27%)
Length = 532
Score = 101 bits (252), Expect = 1e-22
Identities = 55/126 (43%), Positives = 76/126 (59%), Gaps = 7/126 (5%)
Frame = -1
Query: 26 ASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYKII 85
A+ W A AT Y + ++ ++ GACGYGN GYGT TAALS ALF G CG C+++
Sbjct: 364 AAEWLPATATHYTATTSD-SVDGACGYGN----GYGTATAALSQALFGRGQICGACFELR 200
Query: 86 CDYKT-----DPRWCI-KGRSITITATNFCPPNFDLPNDD-GGWCNPPLKHFDMAQPAWE 138
C + D RWC+ S+ +TAT+FC PN+ + GG CNPP +HF + A+E
Sbjct: 199 CVEEESATAFDRRWCVSSSTSVVVTATDFCAPNYGFDAESRGGRCNPPKQHFVLPVEAFE 20
Query: 139 KIGIYR 144
KI I++
Sbjct: 19 KIAIWK 2
>AV411807
Length = 401
Score = 95.9 bits (237), Expect = 6e-21
Identities = 48/85 (56%), Positives = 58/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 24 FKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYK 83
F+ S W AHATFYG A TMGGACGYGNL+ GYGT T ALS+ LFN+G +CG CY+
Sbjct: 152 FRPSKWALAHATFYGDETASETMGGACGYGNLFQSGYGTDTVALSSTLFNNGYACGTCYQ 331
Query: 84 IICDYKTDPRWCIKGRSI-TITATN 107
I C Y++ C K + T+TATN
Sbjct: 332 IKC-YQSSA--CYKNVAFTTVTATN 397
>TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (24%)
Length = 552
Score = 75.1 bits (183), Expect = 1e-14
Identities = 31/61 (50%), Positives = 40/61 (64%)
Frame = +1
Query: 192 IKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVPSNWGFGQSFSS 251
+KGS+T W+ M RNWG NW NA L Q +SF+VT +DG T T + P +W FGQ+F
Sbjct: 1 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 180
Query: 252 K 252
K
Sbjct: 181 K 183
>TC8270 similar to UP|Q7XHJ2 (Q7XHJ2) Expansin-like protein (Fragment),
partial (90%)
Length = 1006
Score = 65.1 bits (157), Expect = 1e-11
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 10/225 (4%)
Frame = +3
Query: 40 SDAEGTMGGACGYGNLYSQGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIK-G 98
S A GACGY +L G AA +LF GA CG CY++ C +P C K G
Sbjct: 129 SKASALSSGACGYDSLALGLSGGHLAAGVPSLFKSGAGCGACYQLRC---KNPTLCKKEG 299
Query: 99 RSITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCK 158
+ +T N PN+ + MAQ + I + GIV + ++RV C+
Sbjct: 300 ARVVLTDLN--------PNNQTEFVLSSRAFVAMAQDG-KGQQILKLGIVDIEYKRVACE 452
Query: 159 ---KHGGVRFSVNGR--DYFELVLISNLAGAGSIQSVSI-KGSKTDWMAMSRNWGANWQS 212
++ VR + + DY + + G I V + + ++W MSRN GA W +
Sbjct: 453 FKNQNLAVRVEESSKKPDYLAIKFLYQ-GGQTEIVGVDVAQVGSSNWRFMSRNHGAVWDT 629
Query: 213 NAYLNGQSMSFKVTTT---DGVTRTFQDIVPSNWGFGQSFSSKIQ 254
+ G + F++ T DG Q ++P +W G + S ++
Sbjct: 630 SRVPQG-PLQFRLVVTAGYDGKWVWAQKVLPLDWKNGVIYDSGVK 761
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,925
Number of Sequences: 28460
Number of extensions: 79196
Number of successful extensions: 437
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of query: 255
length of database: 4,897,600
effective HSP length: 88
effective length of query: 167
effective length of database: 2,393,120
effective search space: 399651040
effective search space used: 399651040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146790.2