BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146785.9 + phase: 0
(514 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14229 similar to UP|P93166 (P93166) SCOF-1, partial (38%) 63 1e-10
TC7910 homologue to UP|P93166 (P93166) SCOF-1, partial (52%) 54 8e-08
BI419936 53 1e-07
TC11237 similar to UP|Q43614 (Q43614) DNA-binding protein, parti... 52 3e-07
TC15789 similar to UP|O22086 (O22086) ZPT2-14, partial (37%) 40 7e-04
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%) 39 0.002
TC18188 similar to UP|ZFP6_ARATH (Q39265) Zinc finger protein 6,... 35 0.038
TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragmen... 34 0.065
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 32 0.25
AV408648 32 0.32
BP051859 32 0.32
AV777755 31 0.42
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 31 0.55
TC12276 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protei... 31 0.55
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 30 0.72
CN825185 30 0.72
BP052714 30 0.72
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 30 0.95
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 29 1.6
CB826842 29 1.6
>TC14229 similar to UP|P93166 (P93166) SCOF-1, partial (38%)
Length = 1175
Score = 63.2 bits (152), Expect = 1e-10
Identities = 42/130 (32%), Positives = 60/130 (45%)
Frame = +1
Query: 382 SYSEDSAYESDENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMKSKKSKEHECPIC 441
SY +++ S S++ A N N + T+ + K HEC IC
Sbjct: 409 SYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNG-----------GKMHECSIC 555
Query: 442 NKIFKSGQALGGHKRSHFIGGNDDNTLVIRPAAAAHAHAAPAAHAHAAPAPPAFAAAANP 501
+K F +GQALGGHKR H+ GG N+ + HA+ + A + A+A +
Sbjct: 556 HKSFPTGQALGGHKRCHYEGGKSSNS----TNSNVHANTSSAV---TTTSDGGAASAHSL 714
Query: 502 SLFDLNLPAP 511
FDLNLPAP
Sbjct: 715 RGFDLNLPAP 744
Score = 45.4 bits (106), Expect = 2e-05
Identities = 37/134 (27%), Positives = 48/134 (35%)
Frame = +1
Query: 6 CKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDLG 65
C C K FP ++LGGH +H S + Q+ +N NASV
Sbjct: 382 CSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASV------------------ 507
Query: 66 SNGGGSGGDDGNLIYGLRENPKKTTRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHMA 125
S G+GG +H C C K FP+ +AL GH
Sbjct: 508 STSTGNGGK------------------MHE-----------CSICHKSFPTGQALGGHKR 600
Query: 126 CHSEKDKGANRIES 139
CH E K +N S
Sbjct: 601 CHYEGGKSSNSTNS 642
Score = 45.1 bits (105), Expect = 3e-05
Identities = 29/84 (34%), Positives = 39/84 (45%), Gaps = 13/84 (15%)
Frame = +1
Query: 406 AQSNKNMNGKTNKKSSYKGKKKMKSKKSKE-------------HECPICNKIFKSGQALG 452
AQS N N N ++ + S S+ H+C +C+K F S QALG
Sbjct: 247 AQSGNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALG 426
Query: 453 GHKRSHFIGGNDDNTLVIRPAAAA 476
GHK SH +++ T PAAAA
Sbjct: 427 GHKASHRKSSSENQT----PAAAA 486
Score = 35.0 bits (79), Expect = 0.029
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)
Frame = +1
Query: 65 GSNGGGSGGDDGNLIYGLRENPKKTTRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHM 124
G+N + D N E+ + +++ C C K FPS +AL GH
Sbjct: 256 GNNNNKNNNTDNNTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHK 435
Query: 125 ACHSEKDKGANRIESVSGVREKQKLVMDSQSD---TEASVQTDSRRSRRM----KFKNLS 177
A H K N+ + + V + + + + E S+ S + + K +
Sbjct: 436 ASH-RKSSSENQTPAAAAVNDNASVSTSTGNGGKMHECSICHKSFPTGQALGGHKRCHYE 612
Query: 178 GGGGDNKSSSSLHWGNCSSSVS 199
GG N ++S++H N SS+V+
Sbjct: 613 GGKSSNSTNSNVH-ANTSSAVT 675
>TC7910 homologue to UP|P93166 (P93166) SCOF-1, partial (52%)
Length = 1035
Score = 53.5 bits (127), Expect = 8e-08
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 434 KEHECPICNKIFKSGQALGGHKRSHFIGGNDDNTLVIRPAAAAHAHAAPAAHAHAAPAPP 493
K H+C IC K F +GQALGGHKR H+ GG ++ A A + + H+H
Sbjct: 513 KVHQCSICQKSFPTGQALGGHKRCHYEGGGGASS----TATATASEGVGSTHSHQRN--- 671
Query: 494 AFAAAANPSLFDLNLPA-PD 512
FDLNLPA PD
Sbjct: 672 ----------FDLNLPAFPD 701
Score = 36.2 bits (82), Expect = 0.013
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 436 HECPICNKIFKSGQALGGHKRSH 458
++C +C K F S QALGGHK SH
Sbjct: 363 YKCSVCEKTFPSYQALGGHKASH 431
Score = 35.4 bits (80), Expect = 0.022
Identities = 32/130 (24%), Positives = 40/130 (30%)
Frame = +3
Query: 6 CKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDLG 65
C C K FP ++LGGH +H + + S
Sbjct: 369 CSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSS-----------------A 497
Query: 66 SNGGGSGGDDGNLIYGLRENPKKTTRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHMA 125
SNGGG VH C C K FP+ +AL GH
Sbjct: 498 SNGGGK---------------------VHQ-----------CSICQKSFPTGQALGGHKR 581
Query: 126 CHSEKDKGAN 135
CH E GA+
Sbjct: 582 CHYEGGGGAS 611
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +3
Query: 99 ATVQMEKF---CKECGKGFPSLKALCGHMACHSEKDKGANRIESVS 141
A V EK C C K FPS +AL GH A H + A S S
Sbjct: 336 APVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTS 473
>BI419936
Length = 503
Score = 52.8 bits (125), Expect = 1e-07
Identities = 58/172 (33%), Positives = 76/172 (43%), Gaps = 1/172 (0%)
Frame = +3
Query: 195 SSSVSEVEQEQEDVARCLMLLSRDSTYKGRFPLVTESSDNNSVVVEEKSPSVDTKFAVMN 254
SSS+S+VE EQE+VA LM+LS+D + ESSDNNS E SV T
Sbjct: 27 SSSISDVEHEQEEVAMSLMMLSKDLSPWSGLHSRAESSDNNSANFEAPRSSVRTNLVTRI 206
Query: 255 RGKNIVGAKNNGFELAEK-KLNKDGKMKSVEIGYVSDNSDSGYFTYGPKKVESDDSSDGF 313
G N +E A N K KS E+ +S S F K S S F
Sbjct: 207 EG-------NKKWEFANSIPANFKSKGKSSEL--LSTESPENEF----KMKRSGVSLKEF 347
Query: 314 FRNDAKSSKVGYFSSFQDHDFESSKKIISRGRNRNSAEFKKVVLENSSKKTK 365
+N +SK + DFE +G+NR + + V+ + SS KTK
Sbjct: 348 IKNGKSNSK-------SELDFEG-----EQGKNRVNGT-ESVLSKYSSIKTK 464
>TC11237 similar to UP|Q43614 (Q43614) DNA-binding protein, partial (20%)
Length = 523
Score = 51.6 bits (122), Expect = 3e-07
Identities = 32/85 (37%), Positives = 38/85 (44%)
Frame = +3
Query: 430 SKKSKEHECPICNKIFKSGQALGGHKRSHFIGGNDDNTLVIRPAAAAHAHAAPAAHAHAA 489
+ K+K HEC IC F SGQALGGH R H N AAA ++
Sbjct: 36 NNKAKIHECSICGSEFTSGQALGGHMRRHRASAN----------AAAETNSNAITSTTVV 185
Query: 490 PAPPAFAAAANPSLFDLNLPAPDDE 514
PP N DLNLPAP ++
Sbjct: 186 ARPP-----RNILQLDLNLPAPPED 245
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/59 (32%), Positives = 26/59 (43%)
Frame = +3
Query: 6 CKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDL 64
C C F G++LGGH+R H S N+ N+NA + R +LDL
Sbjct: 60 CSICGSEFTSGQALGGHMRRHRASANAAAET-----NSNAITSTTVVARPPRNILQLDL 221
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 5/68 (7%)
Frame = +3
Query: 107 CKECGKGFPSLKALCGHMACH-----SEKDKGANRIESVSGVREKQKLVMDSQSDTEASV 161
C CG F S +AL GHM H + + +N I S + V + ++ + A
Sbjct: 60 CSICGSEFTSGQALGGHMRRHRASANAAAETNSNAITSTTVVARPPRNILQLDLNLPAPP 239
Query: 162 QTDSRRSR 169
+ D R S+
Sbjct: 240 EDDLRESK 263
>TC15789 similar to UP|O22086 (O22086) ZPT2-14, partial (37%)
Length = 747
Score = 40.4 bits (93), Expect = 7e-04
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = +1
Query: 425 KKKMKSKKSKEHECPICNKIFKSGQALGGHKRSH 458
K+K +S E EC CN+ F S QALGGH+ SH
Sbjct: 208 KQKRTINESVEFECKTCNRKFSSFQALGGHRASH 309
Score = 36.6 bits (83), Expect = 0.010
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +1
Query: 380 RESYSEDSAYESDENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMKSKKSKEHECP 439
+ + +E +E + + S+ A + + + + K + K + H C
Sbjct: 214 KRTINESVEFECKTCNRKFSSFQALGGHRASHNHKRVKLEEQAKTPSLWDNNKPRMHVCS 393
Query: 440 ICNKIFKSGQALGGHKRSH 458
+C F GQALGGH R H
Sbjct: 394 VCGLGFSLGQALGGHMRKH 450
Score = 30.4 bits (67), Expect = 0.72
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 107 CKECGKGFPSLKALCGHMACHSEK 130
CK C + F S +AL GH A H+ K
Sbjct: 247 CKTCNRKFSSFQALGGHRASHNHK 318
Score = 30.0 bits (66), Expect = 0.95
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +1
Query: 5 VCKYCLKRFPCGKSLGGHIRTHMMSENSLQSN 36
VC C F G++LGGH+R H +E S+
Sbjct: 385 VCSVCGLGFSLGQALGGHMRKHRNNEGFSSSS 480
Score = 27.7 bits (60), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = +1
Query: 107 CKECGKGFPSLKALCGHMACHSEKDKGANRIESVSGVREK 146
C CG GF +AL GHM H + ++ S ++E+
Sbjct: 388 CSVCGLGFSLGQALGGHMRKHRNNEGFSSSSSSSYSIKEE 507
>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
Length = 592
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 436 HECPICNKIFKSGQALGGHK---RSHFIGGNDDNTLVIRPAAAA 476
++C +C+K F S QALGGHK R H GG +D++ +A A
Sbjct: 389 YKCSVCDKAFPSYQALGGHKASHRKHSGGGGEDHSAGATSSAVA 520
Score = 31.6 bits (70), Expect = 0.32
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 107 CKECGKGFPSLKALCGHMACHSEKDKGANRIES 139
C C K FPS +AL GH A H + G S
Sbjct: 395 CSVCDKAFPSYQALGGHKASHRKHSGGGGEDHS 493
>TC18188 similar to UP|ZFP6_ARATH (Q39265) Zinc finger protein 6, partial
(21%)
Length = 594
Score = 34.7 bits (78), Expect = 0.038
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +3
Query: 356 VLENSSKKTKNGYNNEVYESLKIDRESYSEDSAYESDENSSESDSYPAPKAQSNKNMNGK 415
++E+ + N+ LK+ S ED E+ DS P KA S +
Sbjct: 72 LMEDQIRNHTRRVNSNSTTCLKLFGFSVHEDMDDEAAALEDTPDSLPV-KATSPSGSSDS 248
Query: 416 TNKKSSYKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSH 458
N ++ ++ +C C + F + QALGGH+ +H
Sbjct: 249 GNGDAAGSASGINTPSGDRKKKCQYCCREFANSQALGGHQNAH 377
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 6 CKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKF 53
C+YC + F ++LGGH H L KR A+ A F
Sbjct: 315 CQYCCREFANSQALGGHQNAHKKERQQL-----KRAQLQATRKAAVSF 443
>TC19835 similar to UP|Q9ZRW0 (Q9ZRW0) Nucleolar protein (Fragment), partial
(16%)
Length = 550
Score = 33.9 bits (76), Expect = 0.065
Identities = 33/119 (27%), Positives = 53/119 (43%), Gaps = 23/119 (19%)
Frame = +1
Query: 340 IISRGRNRNSAEFKKVVLENSSKKTK--------------------NGYNNEVYES---L 376
I S N E ++V +E SSKK+K NG E ++S
Sbjct: 43 IESAANNDAEMETEEVPVEASSKKSKKKQKAADEGDEMAVDKPTVTNGDAVEDHKSEKKK 222
Query: 377 KIDRESYSEDSAYESDENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMKSKKSKE 435
K ++ ++ A E+ N + S+ K + K+ NG+ + +S + KKK KSKK+ E
Sbjct: 223 KKEKRKLDQEVAAENGTNGNASEPRSVKKKKDRKDDNGEAVEAAS-ESKKKKKSKKNAE 396
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 32.0 bits (71), Expect = 0.25
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 7/180 (3%)
Frame = +2
Query: 339 KIISRGRNRNSAEFKKVVLENSSKKTKNGYNNEVYESLKIDRE------SYSEDSAYESD 392
K + + + FKK++L + K G +V S K+ + S+ +A +
Sbjct: 320 KFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKLPSAKSSAAAAASKPAAAKKK 499
Query: 393 ENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMKSKKSKEHECPICNKIFKSGQALG 452
+ + S P PKA++ K T K+ K K + K+ P K+ A
Sbjct: 500 PQPAAAKSKPKPKAKA-KPAAAATKAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKPAAK 676
Query: 453 GHKRSHFIGGNDDNTLVIRPAAAAHAHAAPAAHAHAAPA-PPAFAAAANPSLFDLNLPAP 511
+PAA A A AAP A A A+PA P A A + ++N P P
Sbjct: 677 A-----------------KPAAKAKAVAAP-AKAKASPAKPKAKAKSKTAPRMNVNPPVP 802
>AV408648
Length = 430
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 5/60 (8%)
Frame = -2
Query: 33 LQSNEEKRMNANAS-----VNAMFKFDEGRKRKRLDLGSNGGGSGGDDGNLIYGLRENPK 87
L+ ++ KR+ N+S + + K D G +RKR L GGG GG + + R P+
Sbjct: 267 LRGSKGKRVARNSSRLFNFTSYVLKNDGGIRRKRWKLSGGGGGGGGGESFRDFDRRSAPR 88
>BP051859
Length = 566
Score = 31.6 bits (70), Expect = 0.32
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 177 SGGGGDNKSSSSLHWGNCSSSVSEVEQEQEDVARCLMLLSR 217
S GGDN S SS S+ ++E+ED+A CL+LL++
Sbjct: 369 SVSGGDNMSFSS--------SMESADREEEDMANCLILLAQ 467
>AV777755
Length = 373
Score = 31.2 bits (69), Expect = 0.42
Identities = 20/75 (26%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Frame = +2
Query: 390 ESDENSSESDSYPAPKA------QSNKNMNGKTNKKSSYKGKKKMKSKKSKEHECPICNK 443
E+ +SS + P PKA + +N+ G + + + C ICNK
Sbjct: 56 EASVSSSGNQIVPPPKAATTTTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNK 235
Query: 444 IFKSGQALGGHKRSH 458
F+ Q L H+R H
Sbjct: 236 GFQRDQNLQLHRRGH 280
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 30.8 bits (68), Expect = 0.55
Identities = 28/106 (26%), Positives = 46/106 (42%), Gaps = 10/106 (9%)
Frame = +1
Query: 340 IISRGRNRNSAEFKKVVLENSSKKTKNGYNNEVYES--LKIDRESYS------EDSAYES 391
++ G+ + E +K E KK K+ N EV S K ++E ED + +
Sbjct: 40 VVDEGKVKVEVEGEKK--EKKKKKKKDQENGEVASSDEEKAEKEKKKKHKVKVEDGSPDL 213
Query: 392 DENSSESDSYPAPKAQSN--KNMNGKTNKKSSYKGKKKMKSKKSKE 435
D++ + A+ N + NGK ++KS K KKK +E
Sbjct: 214 DQSEKKKKKKKDQDAEDNAAEISNGKEDRKSEKKHKKKKNQDAEEE 351
>TC12276 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protein S25-1,
complete
Length = 551
Score = 30.8 bits (68), Expect = 0.55
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 391 SDENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMK 429
SD + + D P P ++ K+ GK KK KGK+K K
Sbjct: 32 SDSMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 148
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 30.4 bits (67), Expect = 0.72
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 472 PAAAAHAHAAPAAHAHAAPAPPAFAAAANPSLFDLNLPAP 511
PAA+ A AAP A A+PA PA AAA + + PAP
Sbjct: 254 PAASGPAPAAPTPPATASPAHPATAAAVS------SAPAP 355
>CN825185
Length = 541
Score = 30.4 bits (67), Expect = 0.72
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 413 NGKTNKKSSYKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSH 458
N T +K + S + C C+K F S QA+GGH+ +H
Sbjct: 129 NSITTRKRQMGMWLSLSQPGSHGYGCLYCSKRFSSVQAVGGHQNAH 266
Score = 28.1 bits (61), Expect = 3.6
Identities = 17/66 (25%), Positives = 32/66 (47%)
Frame = +3
Query: 107 CKECGKGFPSLKALCGHMACHSEKDKGANRIESVSGVREKQKLVMDSQSDTEASVQTDSR 166
C C K F S++A+ GH H R+ES E ++L+M + + E + + +
Sbjct: 204 CLYCSKRFSSVQAVGGHQNAHR-----TERVES-----EMRQLIMMNMREREDEKRREIQ 353
Query: 167 RSRRMK 172
+R++
Sbjct: 354 EGKRVE 371
Score = 27.7 bits (60), Expect = 4.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 6 CKYCLKRFPCGKSLGGHIRTH 26
C YC KRF +++GGH H
Sbjct: 204 CLYCSKRFSSVQAVGGHQNAH 266
>BP052714
Length = 511
Score = 30.4 bits (67), Expect = 0.72
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 420 SSYKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRS 457
S+ + K K E+ C CN+ FK+ ALG H ++
Sbjct: 304 STKQPAKPQTPKSGGEYSCKPCNRSFKTEDALGSHXKA 191
>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (65%)
Length = 1341
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 379 DRESYSEDSAYESDENSSESDSYPAP--KAQSNKNMNGKTNKKSSYKGKKKMKSKKSK 434
D S EDS ESD+ S + + P P K K ++ K+ GKK + K
Sbjct: 595 DLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRPNESASKTPVSGKKAKNATPEK 768
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 29.3 bits (64), Expect = 1.6
Identities = 25/110 (22%), Positives = 41/110 (36%), Gaps = 9/110 (8%)
Frame = +1
Query: 335 ESSKKIISRGRNRNSAEFKKVVLENSSKKTKNGYNNEVYESLKIDRESYSEDSAYESDEN 394
+ S + + SA+ KK E KK K N E L D + E + ++
Sbjct: 1471 QKSDSAMDEDTHEPSADKKK---EKKEKKKKKEKNEEKDVPLLADEDGDEEKEVVKKEKK 1641
Query: 395 SSESDSYPAPKAQSNKNMNGKTNKKSSYK---------GKKKMKSKKSKE 435
+S + Q+ + K K+ + KKK K KKS++
Sbjct: 1642 KKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKKGKKKKSED 1791
>CB826842
Length = 637
Score = 29.3 bits (64), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 434 KEHECPICNKIFKSGQALGGHKRSH 458
+ + C C + F + QALGGH H
Sbjct: 121 RSYSCTFCKRGFSNAQALGGHMNIH 195
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,741,618
Number of Sequences: 28460
Number of extensions: 99995
Number of successful extensions: 798
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of query: 514
length of database: 4,897,600
effective HSP length: 94
effective length of query: 420
effective length of database: 2,222,360
effective search space: 933391200
effective search space used: 933391200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146785.9