TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146784.6 - phase: 0 
         (617 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11924 similar to UP|P93484 (P93484) BP-80 vacuolar sorting rec...   281  3e-76
AI967865                                                              162  1e-40
TC16251 similar to UP|Q945B9 (Q945B9) Growth-on protein GRO11, p...    50  8e-07
AV410062                                                               30  1.5
TC9787                                                                 28  4.3
BI418311                                                               28  4.3
TC10367                                                                28  4.3
TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalact...    27  7.4
TC8450 similar to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1...    27  7.4
AV776899                                                               27  9.7
BF177670                                                               27  9.7

>TC11924 similar to UP|P93484 (P93484) BP-80 vacuolar sorting receptor,
           partial (41%)
          Length = 783

 Score =  281 bits (718), Expect = 3e-76
 Identities = 140/273 (51%), Positives = 178/273 (64%), Gaps = 26/273 (9%)
 Frame = +3

Query: 351 NPVLKAEQEAQIGKESRGDVTILPTLVINNRQYRGKLSRPAVLKAMCAGFQETTEPSICL 410
           +PVLK EQ+AQ+GK SRGDVTILPTLV+NNRQYRGKL + AV+KA+C+GF+ETTEP++CL
Sbjct: 3   DPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICSGFEETTEPAVCL 182

Query: 411 TPDMETNECLENNGGCWKEKSSNITACRDTFRGRVCVCPVVNNIKFVGDGYTHCEASGTL 470
           + D+ETNECLENNGGCWK+K++NITAC+DTFRGRVC CP+V+ ++F GDGYT CEASG  
Sbjct: 183 SSDVETNECLENNGGCWKDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPG 362

Query: 471 SCEFNNGGCWKASHGGRLYSACHDDYRKGCECPSGFRGDGVRSCEDCFNIFRILTMLQIL 530
            C+  NGGCW  +  G  +SAC DD    C+CP+GF+GDGV++C+D             +
Sbjct: 363 RCKIKNGGCWHEARNGHAFSACVDDGEVKCQCPAGFKGDGVKNCQD-------------V 503

Query: 531 MNAKKSRLASVHNANAKIPLGVMSASA-----------IAVCSTHEKMTR---------- 569
              K+ +       + K   G    S              +  T  +  R          
Sbjct: 504 DECKEKKACQCPECSCKNTWGSYDCSCSGDLLYIRDHDTCISKTASQGGRSAWAAFWVII 683

Query: 570 ---VLS--GGYAFYKYRIQRYMDTEIRAIMAQY 597
              VLS  GGY  YKYRI+ YMD+EIRAIMAQY
Sbjct: 684 AGLVLSAGGGYLIYKYRIRSYMDSEIRAIMAQY 782


>AI967865 
          Length = 326

 Score =  162 bits (410), Expect = 1e-40
 Identities = 73/102 (71%), Positives = 89/102 (86%)
 Frame = +2

Query: 347 ADVENPVLKAEQEAQIGKESRGDVTILPTLVINNRQYRGKLSRPAVLKAMCAGFQETTEP 406
           ADVEN VLK EQ+ Q+G+ SRGDVTILPTLVINN QY GKL R  VLKA+CAGF+E+TEP
Sbjct: 20  ADVENEVLKNEQQVQVGRGSRGDVTILPTLVINNVQYTGKLERTPVLKAVCAGFKESTEP 199

Query: 407 SICLTPDMETNECLENNGGCWKEKSSNITACRDTFRGRVCVC 448
            +CL+ D+ETNECLE NGGCW++K+++I+AC+DTFRGRVC C
Sbjct: 200 PVCLSGDIETNECLERNGGCWQDKNASISACKDTFRGRVCEC 325


>TC16251 similar to UP|Q945B9 (Q945B9) Growth-on protein GRO11, partial (9%)
          Length = 905

 Score = 50.4 bits (119), Expect = 8e-07
 Identities = 31/83 (37%), Positives = 44/83 (52%)
 Frame = +3

Query: 95  LVDRGDCYFTLKAWNAQNGGAAAILVADDREETLITMDTPEEGNVVNDDYIEKINIPSAL 154
           L  RG C FT KA  AQ+GGA+A+L+ +D E+      +   G          I+IP  L
Sbjct: 312 LCTRGGCDFTTKAAFAQSGGASAMLLINDEEDLFEMACSNSTGG--------NISIPVVL 467

Query: 155 ISKSLGDRIKKALSDGEMVHINL 177
           I+KS G+   K+L+ G  V + L
Sbjct: 468 ITKSAGEAFNKSLASGRKVEVLL 536


>AV410062 
          Length = 435

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 477 GGCWKASHGGRLYSACHDDYRKGCECP 503
           GGCW+ S+GG  +SA     R+G E P
Sbjct: 397 GGCWEKSNGGNTFSAA----RRGTENP 329


>TC9787 
          Length = 716

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 23/96 (23%), Positives = 38/96 (38%)
 Frame = +1

Query: 466 ASGTLSCEFNNGGCWKASHGGRLYSACHDDYRKGCECPSGFRGDGVRSCEDCFNIFRILT 525
           A+G L      G C   + G    + C D  ++GC      R          FN+   L 
Sbjct: 253 AAGALIATGQGGNCPPGTGGRDRSTNCFDQVKRGCHHDPYLRSGC**MLAVIFNMSSSLL 432

Query: 526 MLQILMNAKKSRLASVHNANAKIPLGVMSASAIAVC 561
           +L +L+ ++  + AS       +P  V S+  I+ C
Sbjct: 433 LLHLLLFSRIGKFASF----PILPRFVCSSLCISTC 528


>BI418311 
          Length = 540

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 528 QILMNAKKSRLASVHNANAKIPLGVMSASAIAVC 561
           +ILM A+   L S+   N  + + ++S SA AVC
Sbjct: 179 RILMTAEVESLKSISAVNLSLSMSMLSISAAAVC 78


>TC10367 
          Length = 527

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 486 GRLYSACHDDYRKGCE---CPSGFRGDGVRSCEDCFNIF 521
           GR Y  C   +++ C    C SG  G GVR+ E CF  F
Sbjct: 117 GRHYI*CICGWKRRCSWNCCGSGMVGCGVRN*EPCFEDF 233


>TC15676 similar to GB|AAG24281.1|10880503|AF195894 arabinogalactan protein
           {Arabidopsis thaliana;} , partial (49%)
          Length = 877

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 469 TLSCEFNNGGCWKASHGG---RLYSACHDDYRKGCEC 502
           T  C F NGG W+ S  G   + +  C+  +   C C
Sbjct: 113 TSGCRFGNGGEWRLSR*GTSSKSHIGCYYSFCSSCFC 223


>TC8450 similar to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1  (PLD alpha
            1) (Choline phosphatase 1)
            (Phosphatidylcholine-hydrolyzing phospholipase D 1) ,
            partial (73%)
          Length = 2062

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 216  FKGAAQLLEKKGFTQFTPHYITWYCPKEFLLSRRCKSQCINHGRY---CAPDPEQDFNKG 272
            +K   Q L  KG  +   +Y+T++C    L +R  K Q    G Y     P+P+ D+++ 
Sbjct: 1148 YKDIIQALRAKGIEEDPRNYLTFFC----LGNREVKKQ----GEYEPSEQPEPDSDYSRA 1303

Query: 273  YDGKDVVV 280
             + +  ++
Sbjct: 1304 QEARRFMI 1327


>AV776899 
          Length = 396

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 446 CVCPVVNNIKFVGDGYTH 463
           C+C +   ++ VGD YTH
Sbjct: 7   CLCTITATVRLVGDRYTH 60


>BF177670 
          Length = 341

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 235 YITWYCPKEFLLSRRCKSQCINHGRYCA 262
           ++T+  P +F L++ CK   +  GR+C+
Sbjct: 195 HVTYLHPLQFWLAKLCKHSRLRSGRHCS 112


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,386,943
Number of Sequences: 28460
Number of extensions: 193413
Number of successful extensions: 941
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of query: 617
length of database: 4,897,600
effective HSP length: 96
effective length of query: 521
effective length of database: 2,165,440
effective search space: 1128194240
effective search space used: 1128194240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)