BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146784.3 - phase: 0
(348 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825556 35 0.014
BE122552 33 0.054
TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, ... 33 0.071
BP043633 33 0.071
BP030435 33 0.093
TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, part... 32 0.21
TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, par... 31 0.35
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 30 0.46
BP054886 30 0.60
TC19168 UP|AAB94924 (AAB94924) Histone H4, complete 30 0.78
AW163944 30 0.78
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 30 0.78
AV408212 29 1.0
AV429304 29 1.0
BP033575 29 1.3
BG662122 29 1.3
TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pro... 28 1.7
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 28 1.7
AW719943 28 1.7
TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa... 28 2.3
>CN825556
Length = 655
Score = 35.4 bits (80), Expect = 0.014
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = +1
Query: 66 PYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPMKYADLLPILLKKNLV 125
P QP+ P Q Q PQ Q + PQ Q Q Q P+P P L + L+
Sbjct: 430 PPQPVPPPPSLPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPVPP------PASLPQPLL 591
Query: 126 QTLPLPRVPNSLPP 139
LP P +P PP
Sbjct: 592 APLPSPGLPEQKPP 633
>BE122552
Length = 388
Score = 33.5 bits (75), Expect = 0.054
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 261 PRIKFDPIPMKY-----GELFPYLLERNLVQTRPPPPIPKKLPARWRPDLFCVFH 310
P I+F P P++ G + P++L R+ ++ R PP P LP RPD+ H
Sbjct: 286 PLIRFTP-PLRAKRRIAGLVMPWMLSRSTLRCRFAPPFPNPLPPFPRPDIVIANH 125
Score = 28.5 bits (62), Expect = 1.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 115 LLPILLKKNLVQTLPLPRVPNSLPPWYRPDLNCVFH 150
++P +L ++ ++ P PN LPP+ RPD+ H
Sbjct: 232 VMPWMLSRSTLRCRFAPPFPNPLPPFPRPDIVIANH 125
>TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, partial
(24%)
Length = 702
Score = 33.1 bits (74), Expect = 0.071
Identities = 29/95 (30%), Positives = 43/95 (44%), Gaps = 6/95 (6%)
Frame = +1
Query: 51 MATNDPPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKF-IPQNQVQKASQCDPIP 109
M + PPL R P +P P +PR+ P + P +P PQ Q Q + P
Sbjct: 265 MELHHPPLHLARRHLPPKPRLPPRPRKSRPPRLPPPLNLPHSAPCPQPQKQPLPRPHTKP 444
Query: 110 MK-YADLLPILLKKNLVQTLP----LPRVPNSLPP 139
++ + P+ L + L++ LP LP P LPP
Sbjct: 445 LQPHRHETPLPLPQQLLR*LPRHAHLPHPP--LPP 543
>BP043633
Length = 542
Score = 33.1 bits (74), Expect = 0.071
Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Frame = +1
Query: 203 PITNVVQDPGY----QPQFRPSQQQYPDSHFVTTILPIMNVVRNPGYQPQFQQYQQQPRQ 258
P+ + Q GY QP P P+ H +P + + P Y PQFQ +
Sbjct: 202 PMDSYQQPHGYMRPPQPPPPPPPPPDPNHHHHFPQIPPPHPPQAPWYSPQFQYHHPSQTP 381
Query: 259 QAPRIKFDPIPMKYGELFPYLLERNLVQTRPPPPIPKKLP 298
P P P PY PPPP P P
Sbjct: 382 SPPPQWGPPPPPPPPPSNPYSYHPKQFPPPPPPPRPPHPP 501
>BP030435
Length = 533
Score = 32.7 bits (73), Expect = 0.093
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = +1
Query: 147 CVFHQGAPGHDTEQCYPLKEEVQKLI 172
CV+HQ A GH TE+C L+ EV KLI
Sbjct: 103 CVYHQ-AMGHITEECRTLQREVGKLI 177
Score = 30.0 bits (66), Expect = 0.60
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +1
Query: 307 CVFHQGAQGHDVERCFSLKIEVQKLI 332
CV+HQ A GH E C +L+ EV KLI
Sbjct: 103 CVYHQ-AMGHITEECRTLQREVGKLI 177
>TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (8%)
Length = 600
Score = 31.6 bits (70), Expect = 0.21
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 75 PRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPMKYADLLP 117
P+QQ P Q +PQ PQ+ +PQ QV Q P Y P
Sbjct: 96 PQQQQP-QVLPQEAQPQQQVPQQQVPPLQQVPPQQPAYQQQYP 221
Score = 28.9 bits (63), Expect = 1.3
Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 1/78 (1%)
Frame = +3
Query: 35 TLRAEVEKLASLVSSLMATNDPPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQ-KF 93
T A +++L L + M N P + PQ + PQ+ + P+Q +PQ QVP +
Sbjct: 18 TAIAAIQELEELGN--MDLNAPLRDETLPQQQQPQVLPQEAQ---PQQQVPQQQVPPLQQ 182
Query: 94 IPQNQVQKASQCDPIPMK 111
+P Q Q P M+
Sbjct: 183 VPPQQPAYQQQYPPFHMQ 236
>TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (38%)
Length = 735
Score = 30.8 bits (68), Expect = 0.35
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 56 PPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQ 104
P +VQQ+P YQ P +P+Q PQ Q P + VQ Q
Sbjct: 127 PTMVQQQPAQQYQQPPPLQPQQPPYAMMPPQAQAPPPHMWAPNVQTPQQ 273
Score = 26.2 bits (56), Expect = 8.7
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = +1
Query: 184 IKVLLQQQH-LAPHSVAAVRPITNVVQDPGYQPQ-----FRPSQQQYPDSHFVTTILPIM 237
++ ++Q H +AP ++ +P Q P QPQ P Q Q P H
Sbjct: 88 VREMMQPGHGMAPPTMVQQQPAQQYQQPPPLQPQQPPYAMMPPQAQAPPPHM-------- 243
Query: 238 NVVRNPGYQPQFQQYQQQP 256
+ P Q QQQP
Sbjct: 244 -------WAPNVQTPQQQP 279
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 30.4 bits (67), Expect = 0.46
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = -3
Query: 266 DPIPMKYGELFPYLLERNLVQTRPPP---PIPKKLPARWRPDLFCVFHQGAQGHDVERCF 322
D + +Y L P+LL NL T PP P+ + R + ++ + + RCF
Sbjct: 434 DLLRSRYLSLPPFLLFPNLESTPLPPSR*PLTSRSRDLSRSESLSLYLSRSLSRSLSRCF 255
Query: 323 SLKIEVQKL 331
SL +E +L
Sbjct: 254 SLSLESPRL 228
>BP054886
Length = 601
Score = 30.0 bits (66), Expect = 0.60
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 277 PYLLERNLVQTRPPPPIPKKLPARW 301
P+ + T PPPP P +LP RW
Sbjct: 489 PHASPSSAAATAPPPPPPPELPGRW 415
>TC19168 UP|AAB94924 (AAB94924) Histone H4, complete
Length = 480
Score = 29.6 bits (65), Expect = 0.78
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 273 GELFPYLLERNLVQTRPPPPIPKKLPARWRPDLF 306
G + P++L R+ PP+P LP RPD+F
Sbjct: 143 GFVMPWMLSRSTFLCLLAPPLPSPLPPFPRPDIF 42
Score = 27.7 bits (60), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 115 LLPILLKKNLVQTLPLPRVPNSLPPWYRPDL 145
++P +L ++ L P +P+ LPP+ RPD+
Sbjct: 137 VMPWMLSRSTFLCLLAPPLPSPLPPFPRPDI 45
>AW163944
Length = 434
Score = 29.6 bits (65), Expect = 0.78
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -2
Query: 261 PRIKFDPIPMKY-----GELFPYLLERNLVQTRPPPPIPKKLPARWRPDL 305
P I+F P P++ G + P +L R ++ R PP P LP RPD+
Sbjct: 226 PLIRFTP-PLRANRRIAGFVIP*MLSRRTLRCRFAPPFPNPLPPFPRPDM 80
Score = 27.3 bits (59), Expect = 3.9
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = -2
Query: 115 LLPILLKKNLVQTLPLPRVPNSLPPWYRPDL 145
++P +L + ++ P PN LPP+ RPD+
Sbjct: 172 VIP*MLSRRTLRCRFAPPFPNPLPPFPRPDM 80
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 29.6 bits (65), Expect = 0.78
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +2
Query: 60 QQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPMKYADLLPIL 119
QQ PQ Q Q+P Q Q Q Q+PQ + Q Q+ + Q LP L
Sbjct: 2 QQLPQLQQQQQLQQQPPQLTQLQQQQQQQLPQ--VQQQQLSQMQQ---------QQLPQL 148
Query: 120 LKKNLVQTLPLPRVP 134
++ L Q P ++P
Sbjct: 149 QQQQLSQLQPQQQLP 193
>AV408212
Length = 362
Score = 29.3 bits (64), Expect = 1.0
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 214 QPQFRPSQQQYPDSHF-VTTILPIMNVVRNPGYQPQFQQYQQQPRQQA 260
QPQ P QQQ H + IL + Q Q QQ QQQ +QQ+
Sbjct: 3 QPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQS 146
>AV429304
Length = 355
Score = 29.3 bits (64), Expect = 1.0
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +3
Query: 53 TNDPPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVP 90
T PP V PQ+P+ P P P+ +P S P P
Sbjct: 15 TYSPPNVPSPPQTPHTPYVPIPPKTPSPVYSPPNVPSP 128
Score = 28.9 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 56 PPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVP 90
PP V PQ+P+ P P P+ +P S P P
Sbjct: 108 PPNVPSPPQTPHAPYVPTPPKTPSPVYSPPNVPSP 212
>BP033575
Length = 515
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Frame = +2
Query: 193 LAPHSVAAVRPITNVVQDPGYQPQFRPSQQQY------PDSHFVTTILP-----IMNVVR 241
LA +VAAV P+T V++ P P Q+++ P S F+ LP + +
Sbjct: 59 LAAATVAAVAPLTTVLRLPTGAPISPRVQERHNLRSV*PSSGFMEPYLPQRRRSLPFLAG 238
Query: 242 NPGYQPQFQQYQQQPRQQAPR 262
NP Q ++ PR+ PR
Sbjct: 239 NPLRPTHRQHHRNHPRRLRPR 301
>BG662122
Length = 386
Score = 28.9 bits (63), Expect = 1.3
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 316 HDVERCFSLKIEVQKLIE 333
HD++ CF+LK E++KLI+
Sbjct: 236 HDIDDCFTLKREIEKLIK 289
Score = 27.3 bits (59), Expect = 3.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 156 HDTEQCYPLKEEVQKLIE 173
HD + C+ LK E++KLI+
Sbjct: 236 HDIDDCFTLKREIEKLIK 289
>TC15341 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (33%)
Length = 1002
Score = 28.5 bits (62), Expect = 1.7
Identities = 20/95 (21%), Positives = 35/95 (36%)
Frame = +1
Query: 4 SKFGSHMQTLVQTGNMDQLEQEVQELRGEVTTLRAEVEKLASLVSSLMATNDPPLVQQRP 63
S SH Q+ N D+ + + + + + +L + + P Q +
Sbjct: 460 SSSSSHSQS-----NEDKSPSTTDSKKADNASDASNQQLALALPNQIAPQPQPAAAQPQA 624
Query: 64 QSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQ 98
+P PQ+P P +P N +PQNQ
Sbjct: 625 PAPNVTQAPQQPAYYIPSTPLPGNTQTVAQLPQNQ 729
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 56 PPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIP 95
PP VQQ PQ YQ PQ+ +QQ +Q Q+PQ+ P
Sbjct: 826 PPPVQQYPQ--YQQ--PQQQQQQQQQQQQWPQQLPQQVQP 933
Score = 27.3 bits (59), Expect = 3.9
Identities = 33/127 (25%), Positives = 46/127 (35%), Gaps = 38/127 (29%)
Frame = +1
Query: 174 NNVWSFDDQDIKVLLQQQHLAPHSVAAVRP------ITNVVQDPGY-------------- 213
+N +Q + + L Q AA +P +T Q P Y
Sbjct: 529 DNASDASNQQLALALPNQIAPQPQPAAAQPQAPAPNVTQAPQQPAYYIPSTPLPGNTQTV 708
Query: 214 ----QPQFRPSQQQY--PDSHFVTTILPIM-----------NVVRNPGYQ-PQFQQYQQQ 255
Q Q+ P QQY P ++ + P V + P YQ PQ QQ QQQ
Sbjct: 709 AQLPQNQYLPPDQQYRTPQMQDMSRVAPQPCTNXSGXSPPPPVQQYPQYQQPQQQQQQQQ 888
Query: 256 PRQQAPR 262
+QQ P+
Sbjct: 889 QQQQWPQ 909
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 28.5 bits (62), Expect = 1.7
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Frame = +1
Query: 54 NDPPLVQQRPQSPYQPMCPQKPRQQAPRQSIPQNQVPQKFIPQNQVQKASQCDPIPMKYA 113
N+P +Q +PQ Q P Q Q Q+Q + I Q+Q Q SQ P
Sbjct: 19 NEPQPLQYQPQPHLQHQPQHHPHFQPHPQPQLQSQPQPQHIQQSQPQPQSQ----PQHIQ 186
Query: 114 DLLPILLKKNLVQTLPLPRVPNS---------LPPW 140
P +++ Q+ P P+ N PPW
Sbjct: 187 QPQPQPQLQHIQQSQPQPQFQNQHFQYPGTYPPPPW 294
>AW719943
Length = 508
Score = 28.5 bits (62), Expect = 1.7
Identities = 25/67 (37%), Positives = 27/67 (39%), Gaps = 2/67 (2%)
Frame = +2
Query: 209 QDPGYQPQFRPSQQQYPDSHFVTTILPIMNVVRNPGYQPQFQQYQQQPRQQAPRIKF--D 266
Q P Q Q QQQ P N + N Q QFQQ QQQ +QQ F D
Sbjct: 95 QQPQQQQQLFQPQQQSPFQQ---------NSLFN-SQQQQFQQQQQQQQQQHQLFLFTND 244
Query: 267 PIPMKYG 273
P YG
Sbjct: 245 RTPASYG 265
>TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (77%)
Length = 1576
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 61 QRPQSPYQPMCPQKPRQQAPRQSIPQNQVP--QKFIPQNQVQKASQCDP 107
Q+ Q PY M PQ+ + Q P P P Q+ P Q Q A P
Sbjct: 177 QQQQQPYMMMPPQQHQPQPPTMWAPSAAQPPQQQHAPPQQHQHAQPSTP 323
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,984,456
Number of Sequences: 28460
Number of extensions: 119104
Number of successful extensions: 906
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of query: 348
length of database: 4,897,600
effective HSP length: 91
effective length of query: 257
effective length of database: 2,307,740
effective search space: 593089180
effective search space used: 593089180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146784.3