TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146784.13 + phase: 0 /pseudo
         (36 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8563 similar to UP|O22631 (O22631) ADP-glucose pyrophosphoryla...    35  0.003
TC8643 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohydro...    32  0.038
TC12381 weakly similar to UP|Q8L5J1 (Q8L5J1) Mannan endo-1,4-bet...    28  0.55

>TC8563 similar to UP|O22631 (O22631) ADP-glucose pyrophosphorylase large
          subunit  , partial (15%)
          Length = 917

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +2

Query: 1  MDAHIEDTEKYLGMPVVFSEFGVSSKDLAT 30
          ++ HI+D +  L  P++F+EFG+S+K+L T
Sbjct: 41 LNDHIQDAQNILHKPLLFAEFGISTKNLGT 130


>TC8643 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohydrolase,
           partial (14%)
          Length = 676

 Score = 31.6 bits (70), Expect = 0.038
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSK 26
           M +HIE+ +K L  PV+FSE+G+S +
Sbjct: 118 MLSHIENGDKVLNKPVLFSEYGLSQR 195


>TC12381 weakly similar to UP|Q8L5J1 (Q8L5J1) Mannan
          endo-1,4-beta-mannosidase  , partial (17%)
          Length = 470

 Score = 27.7 bits (60), Expect = 0.55
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 1  MDAHIEDTEKYLGMPVVFSEFGVSS 25
          + AHI+D+   L  P++ +EFG SS
Sbjct: 37 VQAHIQDSNDVLKKPILITEFGKSS 111


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,163
Number of Sequences: 28460
Number of extensions: 1856
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 36
length of database: 4,897,600
effective HSP length: 12
effective length of query: 24
effective length of database: 4,556,080
effective search space: 109345920
effective search space used: 109345920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)