TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146784.12 - phase: 0 /pseudo
         (60 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11395 similar to UP|Q8W4Q5 (Q8W4Q5) AT5g51450/MFG13_16, partia...    31  0.042
AV773035                                                               27  1.0
AV767518                                                               24  5.2
TC12951 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32),...    24  5.2
TC14241 homologue to UP|Q9XQB4 (Q9XQB4) Photosystem I reaction c...    24  5.2
BP075735                                                               24  6.7
TC7986 similar to UP|Q8SF02 (Q8SF02) Dicarboxylate/tricarboxylat...    23  8.8

>TC11395 similar to UP|Q8W4Q5 (Q8W4Q5) AT5g51450/MFG13_16, partial (8%)
          Length = 606

 Score = 31.2 bits (69), Expect = 0.042
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 34  ARLADIYHVDFSDDDRGTIREQLDTY 59
           A+L +IYH+ F+ D RGT RE+   Y
Sbjct: 524 AQLGNIYHIYFTTDSRGTERERKSLY 447


>AV773035 
          Length = 459

 Score = 26.6 bits (57), Expect = 1.0
 Identities = 18/34 (52%), Positives = 21/34 (60%), Gaps = 2/34 (5%)
 Frame = -2

Query: 8   RSNIVLD--CFSCLDSKNSFSKFDVDKLARLADI 39
           RS IVL   CF+CL+S  S S  DV+K   L DI
Sbjct: 278 RSFIVLPRFCFACLNSIKSKSGDDVEKRLGL*DI 177


>AV767518 
          Length = 474

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = +1

Query: 15  CFSCLDSKNSFSKFDVDKLARLADIYHVDFS 45
           CF CLD K   S +     + LA I+H  FS
Sbjct: 184 CFVCLDQKMGQSPWVACSGSLLAYIFHRGFS 276


>TC12951 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32), partial
           (31%)
          Length = 497

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 27  KFDVDKLARLADIYHVDFSDDDRGTIREQLDT 58
           +FD+ K AR    +  D++  ++ TIR+ ++T
Sbjct: 390 RFDISKKARFHFSHGNDYATKNKKTIRKNINT 295


>TC14241 homologue to UP|Q9XQB4 (Q9XQB4) Photosystem I reaction center
           subunit III, partial (86%)
          Length = 1081

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
 Frame = -3

Query: 5   FRERSNIVLDCFS----CLDS 21
           FRE S+ ++DCFS    C DS
Sbjct: 386 FREDSSFLIDCFSRLANCFDS 324


>BP075735 
          Length = 482

 Score = 23.9 bits (50), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -3

Query: 14  DC---FSCLDSKNSFSKFDVDKLARL 36
           DC   FSCL    SFS F +  LA+L
Sbjct: 417 DCCITFSCLSCPTSFSDFILSCLAKL 340


>TC7986 similar to UP|Q8SF02 (Q8SF02) Dicarboxylate/tricarboxylate carrier,
           partial (96%)
          Length = 1532

 Score = 23.5 bits (49), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 11  IVLDCFSCLDSKNSFSKFDVDKL 33
           I L+CF+C DSK S S   V  L
Sbjct: 485 ISLNCFACQDSKCSKSSSGVCSL 417


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 909,012
Number of Sequences: 28460
Number of extensions: 7624
Number of successful extensions: 62
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of query: 60
length of database: 4,897,600
effective HSP length: 36
effective length of query: 24
effective length of database: 3,873,040
effective search space: 92952960
effective search space used: 92952960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)