TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146777.10 - phase: 1 /pseudo
         (406 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13816                                                               187  2e-48
TC9400 UP|TX20_HUMAN (Q9UMR3) T-box transcription factor TBX20 (...    36  0.010
AV428955                                                               27  6.1
AV422747                                                               27  6.1
TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored p...    27  6.1
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,...    27  8.0
TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting prote...    27  8.0

>TC13816 
          Length = 508

 Score =  187 bits (476), Expect = 2e-48
 Identities = 91/120 (75%), Positives = 105/120 (86%)
 Frame = +2

Query: 284 DVLERRNPLALAHFANHPSKGMLPNVMICPYDFPLIENDMRAYIPNVLFGNAAEENTERF 343
           +++ERRNPLALAHFANHP KG+ PNVMICPYD+PL E++MR +IPNVLFG+ AE N  RF
Sbjct: 14  ELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGD-AEVNMRRF 190

Query: 344 GSFWFKSRVPRNNESHVPTTLKTVVLVATRALQDEELLLNYRLGNTKRCPEWYAPVDEEE 403
           GSFWFKS   RN+ SHVP TLK++VL+ATRA+QDEELLLNYRL NTKR PEWYAPVDEEE
Sbjct: 191 GSFWFKSGGSRNSGSHVP-TLKSLVLIATRAIQDEELLLNYRLSNTKRRPEWYAPVDEEE 367


>TC9400 UP|TX20_HUMAN (Q9UMR3) T-box transcription factor TBX20 (T-box
           protein 20) (Fragment), partial (5%)
          Length = 543

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 21/48 (43%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
 Frame = +1

Query: 19  SLALCEPKV*FLYLLCIL--*SLLQKSWFKCCFQAVKTLAKSPTFAFA 64
           +LA  +P   FL+ +C    *SLL  S+  CC   V T + SP FAFA
Sbjct: 64  ALARRQPISSFLFFVCFSCQ*SLLASSYLPCCLCFVSTFSDSPVFAFA 207


>AV428955 
          Length = 363

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 126 AFCTFMDAVFLPNEKKVNDVSFELSQQTKILPQHSDL 162
           A  TF  AV  P    V D S     Q+ ILP  SDL
Sbjct: 193 ATTTFSPAVPAPQSTAVRDRSVTTDAQSPILPSSSDL 303


>AV422747 
          Length = 121

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 299 NHPSKGMLPNVMICPYDFP 317
           NHPS+  + ++M+C Y FP
Sbjct: 15  NHPSEKWVQSLMLCVYXFP 71


>TC8999 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored protein
           {Arabidopsis thaliana;} , partial (34%)
          Length = 862

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 219 PGVVYSPAYYHHIPGYLDEQNPYLITRHDGNV 250
           PG      YYH IP Y  E++ Y   R  G V
Sbjct: 122 PGAPEQIIYYHIIPEYQTEESMYNAVRRFGKV 217


>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
           (74%)
          Length = 1591

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 5/75 (6%)
 Frame = +2

Query: 118 ENVHAQIKAFCTFMD-AVFLPNEKKVNDVSFELSQQTKILPQHSDLRS----ANGKFVIH 172
           EN H  ++    F + +    N +    + F+   QT +LP H+D  S     +G+ +  
Sbjct: 515 ENEHGHVRVLQRFDERSKLFENLQNYRILEFKAKPQTLVLPHHNDADSIIVILSGRAI-- 688

Query: 173 QLTILKLKDELGYTL 187
            LTI+   D   Y L
Sbjct: 689 -LTIVNPNDRDSYNL 730


>TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4,
           partial (14%)
          Length = 598

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = -1

Query: 289 RNPLALAHFANHPSKGMLPNVMICPYDFPLIENDMRAYIPNVLFGNAAEENTERFGSFWF 348
           +N L   H+ +HP+   L +  + P+   L+EN  +            E   +RF  FW 
Sbjct: 205 QNMLYKEHYLHHPNCQTLVHENVVPFRSELLENTQKM---------KREFFQKRFELFWI 53

Query: 349 KSRVPRNNES 358
                RN+E+
Sbjct: 52  GPS*GRNSEN 23


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,243,504
Number of Sequences: 28460
Number of extensions: 99979
Number of successful extensions: 428
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of query: 406
length of database: 4,897,600
effective HSP length: 92
effective length of query: 314
effective length of database: 2,279,280
effective search space: 715693920
effective search space used: 715693920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)