BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146776.6 - phase: 0
(388 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 117 4e-27
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 74 9e-25
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 94 4e-20
BI419994 89 1e-18
BP052653 78 3e-15
BG662160 76 8e-15
TC19187 73 7e-14
AV768207 69 1e-12
AV423520 69 1e-12
BP076687 69 1e-12
AV427033 69 2e-12
BP035281 68 3e-12
BP051299 67 4e-12
AW720409 67 5e-12
CB826914 67 7e-12
TC9055 67 7e-12
TC18972 64 4e-11
AV414925 62 2e-10
AV413010 60 6e-10
BP050476 60 8e-10
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
clone:K14B20, partial (7%)
Length = 782
Score = 117 bits (292), Expect = 4e-27
Identities = 88/255 (34%), Positives = 123/255 (47%), Gaps = 22/255 (8%)
Frame = +3
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQLVSVFVS-IA 94
+P+E+I+EIL LPV+SLLQFR V K WK+ ISDPQF K H+ ++ S +
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFRNADFEHTSLLI 227
Query: 95 KCN--------LVSYPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGSCNGLLCL------ 140
KC+ + S + LL++PSA + + IG+CNGL+ L
Sbjct: 228 KCHTDDFGRPYISSRTVSSLLESPSAIVASRSCI-----SGYDFIGTCNGLVSLRKLNYD 392
Query: 141 ----SDFYQFTLWNPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRYKVLAVVQN 196
++F Q WNP+ + S+ SP S R L+ GFGYD +D YKV+ ++
Sbjct: 393 ESNTNNFSQVRFWNPATRTMSQDSPPSW------SPRNLHLGFGYDCSSDTYKVVGMIPG 554
Query: 197 CYNLDETKTLIYTFGGKDWTTIQKFPCDPSRCDLGRLGVGKFVSGNLNWIVSKK--VIVF 254
T +Y G W TIQ P P G +VS LNW+ IV
Sbjct: 555 L-----TMVNVYNMGDNCWRTIQISPHAPMHLQ----GSAVYVSNTLNWLAGTNPYFIVS 707
Query: 255 FDIEKETYG-EMSLP 268
FD+EKE ++SLP
Sbjct: 708 FDLEKEECAQQLSLP 752
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 73.9 bits (180), Expect(2) = 9e-25
Identities = 63/200 (31%), Positives = 87/200 (43%), Gaps = 46/200 (23%)
Frame = +3
Query: 38 EEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQL----VSVFVSI 93
+E+I EIL LPV+SL++FRCVCK WK IS+PQF K H+ S+A V V
Sbjct: 84 DELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQFMKLHLRRSSAKAAADFADSQVVVMT 263
Query: 94 AKCNLVSYPLKP----------LLDNPSAHRVEPADFEMIHTT----------------- 126
+ ++ PL D P F H +
Sbjct: 264 KRDHIAHSPLLSKFHIVHDETFTADEPWPVHALREPFNQPHVSICYAPSLFSSQNNDKLK 443
Query: 127 -SMTIIGSCNGLL-CLSDFYQFT---------LWNPSIKLKSKPSPTII----AFDSFDS 171
+IG+CNGL+ +++ Y NP+ KL+S+ SPT+ F S
Sbjct: 444 GHCRLIGACNGLVSVINEGYNSAESATKLSCCNLNPATKLRSQVSPTLSLCYKQFHSLIH 623
Query: 172 KRFLYRGFGYDQVNDRYKVL 191
F GFGYD +ND YKV+
Sbjct: 624 SVFRIFGFGYDPLNDTYKVV 683
Score = 56.2 bits (134), Expect(2) = 9e-25
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Frame = +1
Query: 207 IYTFGGKDWTTIQKFPCDPSRCDLGRLGV----GKFVSGNLNWIVSKKV---IVFFDIEK 259
+Y G W IQ FP D +R GR G +++G +NW++ + I+ D+
Sbjct: 739 VYNMGDGCWRRIQSFP-DFTREHWGRGTAPDQNGVYLNGTINWVLRLNIAYDIISLDLGS 915
Query: 260 ETYGEMSLP-------QDYGDKNTVLYVSSNRIYVSFDHSNKTHWVVWMMKEYGVVESWT 312
E +SLP + D +L V + + V ++++KT +V+W M E+G ESWT
Sbjct: 916 EVCSRLSLPCFPPPGPKCVYDLPPILGVLKDSLCVLHNNNDKT-FVIWKMNEFGAHESWT 1092
Query: 313 KLMIIPQDKLTSPGPYCLSDALFISEHGVLLMRPQHSKLSVYNLNNDGGLDYCTTISGQF 372
L K D F SE+ +L+ +K +YN + D + +
Sbjct: 1093PLFNFDFKK----EDLYRFDKFFFSENDEVLLMTL-TKQVLYNHS-----DITFKFNDRV 1242
Query: 373 ARYLHIYN------ESLVSP 386
Y+H +N ESLVSP
Sbjct: 1243HNYIHDWNNIENYVESLVSP 1302
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 94.0 bits (232), Expect = 4e-20
Identities = 73/227 (32%), Positives = 99/227 (43%), Gaps = 3/227 (1%)
Frame = +3
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQLVSVFVS-IA 94
+P+E+I+EIL LPV+SLLQFR V K WK+ ISDPQF K H+ ++ S +
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFRNADFEHTSLLI 200
Query: 95 KCNLVSYPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGSCNGLLCLSDFYQFTLWNPSIK 154
KC+ DF + +S T+ WNP+ +
Sbjct: 201 KCH-------------------TDDFGRPYISSRTV----------------RFWNPATR 275
Query: 155 LKSKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDETKTLIYTFGGKD 214
S+ SP S R L+ GFGYD +D YKV+ ++ T +Y G
Sbjct: 276 TMSQDSPPSW------SPRNLHLGFGYDCSSDTYKVVGMIPGL-----TMVNVYNMGDNC 422
Query: 215 WTTIQKFPCDPSRCDLGRLGVGKFVSGNLNWIVSKK--VIVFFDIEK 259
W TIQ P P G +VS LNW+ IV FD+EK
Sbjct: 423 WRTIQISPHAPMHLQ----GSAVYVSNTLNWLAGTNPYFIVSFDLEK 551
>BI419994
Length = 549
Score = 89.0 bits (219), Expect = 1e-18
Identities = 61/188 (32%), Positives = 96/188 (50%), Gaps = 17/188 (9%)
Frame = +2
Query: 26 TQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQ 85
T+S+S + + +P+E+I++ILLRLPVRSLL+F+ VCK W+ LISDPQF K H +++ +
Sbjct: 20 TESLS-LFSHLPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFNLAASPTH 196
Query: 86 LV----------------SVFVSIAKCNLVSYPLKPLLDNPSAHRVEPADFEMIHTTSMT 129
+ S + + +PL P +P HR + T +
Sbjct: 197 RIFLNNTNGF*IESLDTDSSLHDESSLVHLKFPLAP--PHPDNHRFGSS------VTGLK 352
Query: 130 IIGSCNGLLCLSDFY-QFTLWNPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRY 188
++GSC G + L++ +WNPS ++ + S FLY G GYD+ ND Y
Sbjct: 353 VLGSCRGFVLLANHQGNVVVWNPSTGVRRRVPEWCSYLAS--QCEFLY-GIGYDESNDDY 523
Query: 189 KVLAVVQN 196
V+ + N
Sbjct: 524 LVVFIESN 547
>BP052653
Length = 552
Score = 77.8 bits (190), Expect = 3e-15
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 32 ITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQLVSVFV 91
+++ +P ++IV+ILLRLPVRSLL+F+ VCK W +LISDPQF K H ++ A V +
Sbjct: 175 LSSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAAPTHRCLVKI 354
Query: 92 SIAKCNLVSYPLKPLLDNPSAHRVEP-ADFEMIHTTSMTIIGSCNGLLCLSDFYQFTLWN 150
+ K + L + + P + + H + I+GSC G + L +WN
Sbjct: 355 NNFKLESLDVDASVLDQSSEVNLKFPYTGYVIFH---IQILGSCRGFIALVRGGDAIVWN 525
Query: 151 PSIKLKSK 158
PS ++ K
Sbjct: 526 PSXCVQRK 549
>BG662160
Length = 445
Score = 76.3 bits (186), Expect = 8e-15
Identities = 54/156 (34%), Positives = 78/156 (49%), Gaps = 9/156 (5%)
Frame = +2
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQLVSVFVSIAK 95
+PEE+ +EIL LPV+SL++FRCV K WK++ISD QF K H+ S++ +
Sbjct: 23 LPEELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLHRSSSTTRNTDF------ 184
Query: 96 CNLVSYPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGSCNGLLCL-------SDFY--QF 146
L S P ++ P D++ G+CNGL+CL D Y
Sbjct: 185 AYLQSLITSPRKSRSASTIAIPDDYD--------FCGTCNGLVCLHSSKYDRKDKYTSHV 340
Query: 147 TLWNPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYD 182
LWNP+++ S+ SP + +DS Y GF YD
Sbjct: 341 RLWNPAMRSMSQRSPPLYLPIVYDS----YFGFDYD 436
>TC19187
Length = 632
Score = 73.2 bits (178), Expect = 7e-14
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 10/93 (10%)
Frame = +1
Query: 236 GKFVSGNLNW-------IVSKKVIVFFDIEKETYGEMSLPQDYGDKNT---VLYVSSNRI 285
GKFVSG LNW + S +IV D++KETY E+ LP DY + L V +
Sbjct: 7 GKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEI-LPPDYEKEECSTPTLSVLKGCL 183
Query: 286 YVSFDHSNKTHWVVWMMKEYGVVESWTKLMIIP 318
+++DH +T +VVWMMK+YGV ESW KL+ IP
Sbjct: 184 CMNYDHK-RTDFVVWMMKDYGVRESWVKLVTIP 279
>AV768207
Length = 374
Score = 69.3 bits (168), Expect = 1e-12
Identities = 39/74 (52%), Positives = 47/74 (62%)
Frame = +1
Query: 8 RSKTRRRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLI 67
R +TR RL S N S +P E+ VEIL RLPV+SLLQ RCVCK WK+LI
Sbjct: 1 RIRTRPRLLPSSSN----PPGDSPPFPTLPFELGVEILCRLPVKSLLQLRCVCKSWKSLI 168
Query: 68 SDPQFAKKHVSIST 81
SDP+FAK H+ S+
Sbjct: 169SDPKFAKNHLRCSS 210
>AV423520
Length = 468
Score = 68.9 bits (167), Expect = 1e-12
Identities = 38/79 (48%), Positives = 53/79 (66%), Gaps = 2/79 (2%)
Frame = +3
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLIS-DPQFAKKHVSISTA-YPQLVSVFVSI 93
+P E++VEIL RLPV+SLLQFRCVCK W +LIS DP+FA+KH+ S + + +F S
Sbjct: 165 LPFELVVEILCRLPVKSLLQFRCVCKSWNSLISGDPKFARKHLRCSPKDFTRHHLIFGST 344
Query: 94 AKCNLVSYPLKPLLDNPSA 112
+ S PL + D+ +A
Sbjct: 345 NEFLFTSSPLLSVFDDAAA 401
>BP076687
Length = 389
Score = 68.9 bits (167), Expect = 1e-12
Identities = 45/134 (33%), Positives = 66/134 (48%), Gaps = 17/134 (12%)
Frame = -3
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTA----------YPQ 85
+PEE+I +ILLRLPVRSLL+F+ VCK W +LISDP+F K H ++ + +
Sbjct: 381 LPEELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSHYDLAASPTYRCLTIANDSE 202
Query: 86 LVSVFVSIAKCNLVS------YPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGSCNG-LL 138
+ S+ V N S YPL P P + ++ +G C G ++
Sbjct: 201 IGSIDVDAPLLNYESSVVKLKYPLPP-----------PCKLSLFSGNTVWFLGYCRGFVI 55
Query: 139 CLSDFYQFTLWNPS 152
+ + LWNPS
Sbjct: 54 VVYEQGDVFLWNPS 13
>AV427033
Length = 420
Score = 68.6 bits (166), Expect = 2e-12
Identities = 30/45 (66%), Positives = 37/45 (81%)
Frame = +1
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSIS 80
+P +++VEIL RLPV SLLQFRCVCK W +LISDP+FAK H+ S
Sbjct: 124 LPFDLVVEILCRLPVNSLLQFRCVCKSWNSLISDPKFAKNHLHCS 258
>BP035281
Length = 498
Score = 67.8 bits (164), Expect = 3e-12
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Frame = +2
Query: 31 EITADM-PEEIIVEILLRLPVRSLLQFRCVCKLWKTLIS-DPQFAKKHVSISTAYPQLVS 88
EI D+ P E+++EIL LPV SL++F+CVCK WK+LIS + FAK + + ++
Sbjct: 104 EIVTDVFPSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAK--LQLERTSLKINH 277
Query: 89 VFVSIAKCNLVSYPLKPLLDNPSAHRVEPAD--FEMIHTTSMTIIGSCNGLLCLSDFY 144
V ++ + + + L LL++PS+ + D + +IGSCNGL+CL Y
Sbjct: 278 VILTSSDSSFIPCSLPRLLEDPSSIMDQDQDRCLRLDKFEYNEVIGSCNGLICLHADY 451
>BP051299
Length = 539
Score = 67.4 bits (163), Expect = 4e-12
Identities = 52/174 (29%), Positives = 89/174 (50%), Gaps = 7/174 (4%)
Frame = +2
Query: 36 MPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSISTAYPQLVSVFVSIAK 95
+P+EI EIL RLP ++L++ VCK W++LI+ F H + S + L+ + A
Sbjct: 5 LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHSPS-SLLLQLCDERAI 181
Query: 96 CNLVSYPLK---PLLDNPSAHRVEPADFEMIHTTSMTIIGSCNGLLCLS---DFYQFTLW 149
N + Y L+ P L S+ R+ P+ F +++G C+GL+C++ + +
Sbjct: 182 PNFIHYSLRRDDPFLSESSSLRL-PSSF----NREFSVVGICHGLVCITSTENCRDLIIC 346
Query: 150 NPSIKLK-SKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDE 202
NPS++L + P P+ + S FG+D N+ YKV+ + C + DE
Sbjct: 347 NPSLRLHITLPEPS-----DYPSLHSASVAFGFDSRNNDYKVIRIA--CMHDDE 487
>AW720409
Length = 575
Score = 67.0 bits (162), Expect = 5e-12
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Frame = +3
Query: 27 QSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLI-SDPQFAKKHVSISTAYPQ 85
QS EI +P E+ +EIL LPV++L++F CV K WK+LI D F K H+ S
Sbjct: 66 QSDMEIEFVLPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNN 245
Query: 86 LVSVFVS---IAKCNLVSYPLKPLLDN--PSAHRV---------EPADFEMIHTTSMTII 131
V + + + +P++ LL + PS+ + + + + H T I
Sbjct: 246 QVILTLQKPLFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFEEEDEDEEDNYHDT----I 413
Query: 132 GSCNGLLCLSDFYQ----FTLWNPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYD 182
GSCNGL+CL F LWNP+ + + SP + A L+ FGYD
Sbjct: 414 GSCNGLVCLYGINDHGLWFRLWNPATRFRFHKSPPLDAVIG----STLHFAFGYD 566
>CB826914
Length = 575
Score = 66.6 bits (161), Expect = 7e-12
Identities = 51/161 (31%), Positives = 79/161 (48%), Gaps = 19/161 (11%)
Frame = +1
Query: 21 NVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSIS 80
+V+ + + DM ++I+EILL LPV+S+++F+ VCKLW++LISDP FA H
Sbjct: 121 SVSTIEIQIQTLHIDMDRDLIIEILLMLPVKSIVRFKAVCKLWRSLISDPLFASLH--FQ 294
Query: 81 TAYPQLVSVFVSIAKCNLVSYPLKPLLDNPSAHRV-EPADFEMI---HTTSM-----TII 131
A P L+ + + PL+ +HRV +P + + H S+ +I
Sbjct: 295 RAAPSLLFADSHAIRTIDLEGPLQ-------SHRVSQPINCHFLSNYHDLSLPRNCISIH 453
Query: 132 GSCNGLLCLSDFY----------QFTLWNPSIKLKSKPSPT 162
GSC G L ++ LWNPS + KP P+
Sbjct: 454 GSCRGFLLITWISNIGYGHPWNDSLYLWNPSTHV-HKPIPS 573
>TC9055
Length = 577
Score = 66.6 bits (161), Expect = 7e-12
Identities = 51/155 (32%), Positives = 78/155 (49%), Gaps = 9/155 (5%)
Frame = +2
Query: 241 GNLNWIVSK------KVIVFFDIEKETYGEMSLPQDYGD-KNTVLYVSSNRIYVSFDHSN 293
G +NW+ +K VIV D+ +E Y +SLPQ + + + V N + + +D
Sbjct: 2 GCVNWLANKFEPFEQLVIVSLDMRQEAYRLLSLPQGTSELPSAEIQVLGNCLCLFYDFK- 178
Query: 294 KTHWVVWMMKEYGVVESWTKLMIIPQDKLTSPGPYCLSDALF-ISEHGVLLMRPQHSKL- 351
+TH+V W M EYG+ ESWT L+ I + L + L+ L + G + M + KL
Sbjct: 179 RTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQKLV 358
Query: 352 SVYNLNNDGGLDYCTTISGQFARYLHIYNESLVSP 386
+YNL +D + Y S + + Y ESLVSP
Sbjct: 359 IIYNL-SDNSVKYVELASNKLWLDANDYVESLVSP 460
>TC18972
Length = 391
Score = 63.9 bits (154), Expect = 4e-11
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Frame = +2
Query: 293 NKTHWVVWMMKEYGVVESWTKLMIIPQDKLTSP-GPYCLSDALFISEHGVLLMR--PQHS 349
N H V+W + YG+ ESW+KL+ IP+ K+ P G + L ISE+G++LM H
Sbjct: 20 NDMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENGLVLMEVDSDHF 199
Query: 350 KLS--VYNLNNDGGLDYCTTIS---GQFARYLHIYNESLVSP 386
KL +YN N G LDY +S + Y++IY+ES VSP
Sbjct: 200 KLQLVMYNAVN-GKLDYPEIMSPGNRHYRHYMYIYHESSVSP 322
>AV414925
Length = 414
Score = 61.6 bits (148), Expect = 2e-10
Identities = 37/120 (30%), Positives = 65/120 (53%), Gaps = 6/120 (5%)
Frame = +1
Query: 27 QSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHV--SISTAYP 84
Q+ + + ++P E+I +IL RLPV SLL+FR + K W++LI F K H+ S++ P
Sbjct: 70 QNPTLMAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNP 249
Query: 85 QLVSVFV----SIAKCNLVSYPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGSCNGLLCL 140
L ++ + + + + S L++P M ++ + I+GSC+GLLC+
Sbjct: 250 NLTNLILRHNTDLYRADFPSIGAAVNLNHPL----------MCYSNRINILGSCHGLLCI 399
>AV413010
Length = 416
Score = 60.1 bits (144), Expect = 6e-10
Identities = 29/70 (41%), Positives = 49/70 (69%)
Frame = +3
Query: 13 RRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQF 72
R++ + ++ T S+S I +P+E+I++ILL+LPV SLL+F+ V K W + IS+PQF
Sbjct: 36 RKMNEQRRSCTEENPSLSSI---LPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQF 206
Query: 73 AKKHVSISTA 82
AK H +++ +
Sbjct: 207 AKSHFNLAAS 236
>BP050476
Length = 520
Score = 59.7 bits (143), Expect = 8e-10
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Frame = +2
Query: 130 IIGSCNGLLCLSDFYQF--------TLWNPSIKLKSKPSPTI-----IAFDSFDSKRFLY 176
+IGS NGL+C +FY LWNP+ LKSK SPT + D+ K L
Sbjct: 212 VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNL- 388
Query: 177 RGFGYDQVNDRYKVLAVVQNCYNLDETKTLIY 208
GFGYD ++D YKV+ V NC + +T++Y
Sbjct: 389 -GFGYDNLHDTYKVVLVHWNC-TKQKMETMVY 478
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,717,150
Number of Sequences: 28460
Number of extensions: 115359
Number of successful extensions: 636
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of query: 388
length of database: 4,897,600
effective HSP length: 92
effective length of query: 296
effective length of database: 2,279,280
effective search space: 674666880
effective search space used: 674666880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146776.6