TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146776.17 - phase: 0 
         (304 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662255                                                              130  4e-31
TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B...    29  1.1
TC16318 weakly similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, part...    27  4.3
BP070811                                                               27  5.6
AV420120                                                               26  7.3
TC16900 similar to UP|Q39492 (Q39492) WP6 protein precursor, par...    26  7.3
AV773671                                                               26  9.5

>BG662255 
          Length = 335

 Score =  130 bits (326), Expect = 4e-31
 Identities = 68/95 (71%), Positives = 81/95 (84%), Gaps = 1/95 (1%)
 Frame = +2

Query: 22  SFSICYLLLQDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGV-EKLDPLVITSASSL 80
           SF     +  DAAK+ G++LACTDEAVLPVSQVFDAI+ELGN+GV E+ +PLVITSASSL
Sbjct: 50  SFHHIPTIAMDAAKIGGSLLACTDEAVLPVSQVFDAIKELGNQGVDEQWNPLVITSASSL 229

Query: 81  SKFPVESSSVDLVVLIWKSLDFPIDQLTQEVLRVL 115
           SK PVESSSVD+ +LIW+SLD P+DQL QE+LRVL
Sbjct: 230 SKLPVESSSVDVAILIWQSLDSPVDQLVQEILRVL 334


>TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B9.12
           {Arabidopsis thaliana;}, partial (89%)
          Length = 1177

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 16/53 (30%), Positives = 25/53 (46%)
 Frame = +2

Query: 208 KPELPSGDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSCG 260
           KP   SG    G T+++    S G+ +   K  + G   E   + ++ CGSCG
Sbjct: 590 KPATDSGSKSRGSTKRS----SDGQVKSNPKFAEEGYEEEDDEHSETLCGSCG 736


>TC16318 weakly similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, partial (20%)
          Length = 550

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (59%), Gaps = 4/30 (13%)
 Frame = -3

Query: 2   QSFFILLLKSTYLHVYVSFESF----SICY 27
           Q   ILL+K   L VY++F +F    SICY
Sbjct: 359 QIIVILLIKHEQLEVYINFPTFRKVISICY 270


>BP070811 
          Length = 400

 Score = 26.6 bits (57), Expect = 5.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 92  LVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIHKSSQSAVGS 133
           L+ +IWKS +  ++ L   +LR+ +A   TLI     S  GS
Sbjct: 372 LLGVIWKSTNIMVNTLNIGLLRIAQAALMTLILNQLNSIHGS 247


>AV420120 
          Length = 428

 Score = 26.2 bits (56), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 227 NCSCGRA--EEEEKVLKLGLTAEQINNPQSACGSCG 260
           +C C R+    ++K  +  L AE  N+PQ  C  CG
Sbjct: 420 SCKCNRS*GSSQKKKKRESLGAENSNSPQWNC*ICG 313


>TC16900 similar to UP|Q39492 (Q39492) WP6 protein precursor, partial (5%)
          Length = 541

 Score = 26.2 bits (56), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 12  TYLHVYVSFESFSICYLLLQDAAKM 36
           ++LH Y  F   S+C+ LL D + +
Sbjct: 472 SHLHAYPPFSFVSVCFFLLLDGSSL 398


>AV773671 
          Length = 453

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 232 RAEEEEKVLKLGLTAEQINNPQSACGSCGL 261
           R EE EK L+L   A+ +     +CGSC +
Sbjct: 326 RTEEAEKHLRLQEHADNL*RRNISCGSCSI 237


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,530,802
Number of Sequences: 28460
Number of extensions: 77544
Number of successful extensions: 383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of query: 304
length of database: 4,897,600
effective HSP length: 90
effective length of query: 214
effective length of database: 2,336,200
effective search space: 499946800
effective search space used: 499946800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)