BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146775.16 - phase: 0
(172 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-... 197 8e-52
BP077077 52 5e-08
CB828101 45 5e-06
AV425891 44 1e-05
BI418773 43 3e-05
BP052407 42 4e-05
TC18684 homologue to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, par... 40 2e-04
TC11265 weakly similar to UP|Q9FY55 (Q9FY55) CLB1-like protein, ... 39 4e-04
AV779131 35 0.005
TC9920 similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, partial (34%) 33 0.026
AV409826 30 0.22
AV776351 26 3.2
AV406506 26 4.2
BP039105 25 5.5
TC19299 similar to UP|Q9FUK9 (Q9FUK9) MYB-related transcription ... 25 7.2
TC14552 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, ... 25 9.4
TC20114 similar to UP|Q9LZ09 (Q9LZ09) Protein phosphatase-like p... 25 9.4
TC9819 25 9.4
>TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-like,
partial (94%)
Length = 711
Score = 197 bits (501), Expect = 8e-52
Identities = 93/164 (56%), Positives = 127/164 (76%)
Frame = +1
Query: 4 NVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIR 63
N+LGLL++R+KRG+NLA+RD SSDPYVVV + + QKLKTRV+K + NPEWNE+LTLS+
Sbjct: 214 NLLGLLRVRVKRGVNLAVRDVRSSDPYVVVKM-YNQKLKTRVIKKDVNPEWNEDLTLSVI 390
Query: 64 DVRVPICLTVFDKDTFFVDDKMGDAEIDLKPYTQCVKMKLDTLPNGCAIKRVQANRTNCL 123
D + LTV+D DTF DDKMGDAE ++ PY + +KM + LPNG IKR+Q ++ NCL
Sbjct: 391 DPHHSVWLTVYDHDTFSKDDKMGDAEFEIFPYIEALKMNVTGLPNGTVIKRIQPSKENCL 570
Query: 124 AEESSCIWKNGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGL 167
A+ES + +GK++Q+MILRLR+VE GE+ + + +D+PG KGL
Sbjct: 571 ADESCIYYNSGKIIQDMILRLRHVECGEVEISLH*IDLPGSKGL 702
>BP077077
Length = 369
Score = 52.0 bits (123), Expect = 5e-08
Identities = 19/35 (54%), Positives = 32/35 (91%)
Frame = -3
Query: 133 NGKVLQEMILRLRNVESGELVVEIEWVDVPGCKGL 167
+GKV+Q+++LRLR+VE GE+ ++++W+D+PG KGL
Sbjct: 367 DGKVVQDVVLRLRHVECGEVEIQLQWIDLPGAKGL 263
>CB828101
Length = 546
Score = 45.4 bits (106), Expect = 5e-06
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +2
Query: 39 QKLKTRVVKNNCNPEWNEELTLSIRD 64
QKLKTRV+K + NPEWNE+LTLS+ D
Sbjct: 47 QKLKTRVIKKDVNPEWNEDLTLSVID 124
>AV425891
Length = 398
Score = 44.3 bits (103), Expect = 1e-05
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 GLLKLRIKRGINLAIRD-SNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDV 65
G ++L + G +L D +SDPYV V+ G+ +K KT+++ NP+WN+ TL D
Sbjct: 88 GWIELVLIEGRDLVAADLRGTSDPYVRVHYGNIKK-KTKIIHKTLNPQWNQ--TLEFPDD 258
Query: 66 RVPICLTVFDKDTFFVDDKMGDAEID 91
P+ L V D + +G+ ++
Sbjct: 259 GSPLVLYVKDHNALLPTSSIGECVVE 336
>BI418773
Length = 561
Score = 43.1 bits (100), Expect = 3e-05
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 28 DPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPICLTVFDKDTFFVDDKMGD 87
DPYV++ ++ T NP+WNE ++ D + L + +KD + DD +G+
Sbjct: 261 DPYVILAYKAQEHKSTVQEGAGSNPQWNETFLFTVSDSASELTLRIMEKDNYNNDDSLGE 440
Query: 88 AEIDL 92
A I L
Sbjct: 441 AIIPL 455
>BP052407
Length = 469
Score = 42.4 bits (98), Expect = 4e-05
Identities = 23/68 (33%), Positives = 34/68 (49%)
Frame = -1
Query: 26 SSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPICLTVFDKDTFFVDDKM 85
+SDPYV V++ +TRV+KN P WNE + + V + + D D F + M
Sbjct: 463 TSDPYVTVSVPQATVARTRVLKNASKPIWNESFNIPLAHPVVDLEFRIKDDDVFGA-ETM 287
Query: 86 GDAEIDLK 93
G +I K
Sbjct: 286 GTVKIPAK 263
>TC18684 homologue to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, partial (16%)
Length = 369
Score = 40.4 bits (93), Expect = 2e-04
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +2
Query: 4 NVLGLLKLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEWNEELTLSIR 63
N GL+ ++ K G ++D Y V G ++ ++TR + ++ P WNE+ T +
Sbjct: 68 NAQGLMPMKTKDG-------RGTTDAYCVAKYG-QKWVRTRTIIDSFTPRWNEQYTWEVF 223
Query: 64 DVRVPICLTVFDKDTFFVDDKMGDAE 89
D I L VFD DK G A+
Sbjct: 224 DPCTVITLGVFDNCHLHNGDKPGGAK 301
>TC11265 weakly similar to UP|Q9FY55 (Q9FY55) CLB1-like protein, partial
(16%)
Length = 668
Score = 39.3 bits (90), Expect = 4e-04
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
Frame = +2
Query: 4 NVLGLLKLRIKRGINL-AIRDSNSSDPYVVVNIGHEQ-----KLKTRVVKNNCNPEWNEE 57
N G+L + + NL A + DP+VV+ + + K KTRVV N NP W++
Sbjct: 65 NYSGVLYVTVISAENLPASHFMGNPDPFVVLTLRKAKSKAKIKNKTRVVNKNLNPNWDQT 244
Query: 58 LTLSIRD-VRVPICLTVFDKDTFFVD 82
+ D + + + V+DK+TF D
Sbjct: 245 FGFDVEDGLHDMVIVEVWDKNTFGKD 322
>AV779131
Length = 530
Score = 35.4 bits (80), Expect = 0.005
Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 2/65 (3%)
Frame = -2
Query: 20 AIRDSNSSDPYVVVNIGH-EQKLKTRVVKNNCNPEWNEELTLSIRD-VRVPICLTVFDKD 77
A+ SDP++V+ + + +TRVV ++ NP WN+ + D + + + V+D+D
Sbjct: 505 AVDFMGKSDPFLVLTLRKADTDNQTRVVYDSLNPVWNQTFDFVVEDGLHDMLIVEVWDRD 326
Query: 78 TFFVD 82
TF D
Sbjct: 325 TFGKD 311
>TC9920 similar to UP|Q9FF85 (Q9FF85) Emb|CAB80929.1, partial (34%)
Length = 825
Score = 33.1 bits (74), Expect = 0.026
Identities = 26/95 (27%), Positives = 40/95 (41%), Gaps = 1/95 (1%)
Frame = +3
Query: 10 KLRIKRGINLAIRDSNSSDPYVVVNIGHEQKLKTRVVKN-NCNPEWNEELTLSIRDVRVP 68
KL RG+ + PY VV + + K TR +N + W++ LT +P
Sbjct: 270 KLSSARGLKNVNWRHGPNKPYAVVWVDPKNKFSTRADENGDTEANWDQTLT-------IP 428
Query: 69 ICLTVFDKDTFFVDDKMGDAEIDLKPYTQCVKMKL 103
+ + T F+D +E D KP K+KL
Sbjct: 429 LPPEPLEDLTLFIDVVHFGSEEDTKPLIGSAKLKL 533
>AV409826
Length = 409
Score = 30.0 bits (66), Expect = 0.22
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 21 IRDSNSSDPYVVVNIGHEQKLKTRVVKNN 49
I S +SDPYV V++G +T +++NN
Sbjct: 323 IEGSGTSDPYVTVSVGGPVVARTFIIRNN 409
>AV776351
Length = 355
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 10 KLRIKRGINLAIRDSNSSDPYVVVNIGHEQK 40
KL G+ LAIR N S Y+ V +GH K
Sbjct: 192 KLSTDGGVRLAIRRCN*SKSYL*VRLGHGLK 284
>AV406506
Length = 399
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 8 LLKLRIKRGINLAIRDSN-SSDPYVVVNIGHEQK 40
L+KL + NL + N +SDPYV+ G+E++
Sbjct: 294 LIKLELLAAKNLVAANLNGTSDPYVINTCGNEKR 395
>BP039105
Length = 576
Score = 25.4 bits (54), Expect = 5.5
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -1
Query: 103 LDTLPNGCAIKRVQANRTNCLAEESSCIWKNG 134
L+ + N + R + R L+E SSC WK G
Sbjct: 228 LEKIRNVLLLARRERKRGLSLSESSSCCWKVG 133
>TC19299 similar to UP|Q9FUK9 (Q9FUK9) MYB-related transcription factor
PHAN1, partial (30%)
Length = 511
Score = 25.0 bits (53), Expect = 7.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 22 RDSNSSDPYVVVNIGHEQKLKTRVVKNNCNPEW 54
RD+ S +P + + TR+++ N NP+W
Sbjct: 253 RDAESKEPKLAEKWTSKPLRLTRLLEPNANPDW 351
>TC14552 similar to UP|THM4_ARATH (Q9SEU6) Thioredoxin M-type 4, chloroplast
precursor (TRX-M4), partial (55%)
Length = 1016
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/41 (26%), Positives = 22/41 (52%)
Frame = -3
Query: 32 VVNIGHEQKLKTRVVKNNCNPEWNEELTLSIRDVRVPICLT 72
++N G + +T +PE+N+ +D R+PIC++
Sbjct: 423 LINYGVDHSART----TPWSPEFNQNGKFRFKDKRLPICIS 313
>TC20114 similar to UP|Q9LZ09 (Q9LZ09) Protein phosphatase-like protein,
partial (33%)
Length = 587
Score = 24.6 bits (52), Expect = 9.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 107 PNGCAIKRVQANRTNCLAEESSC 129
P GC + Q ++ NC A SC
Sbjct: 141 PRGCQYSQQQPSKRNC*AARESC 209
>TC9819
Length = 524
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 128 SCIWKNGKVLQEMILRLRNVE 148
SC WK GKVL I + ++VE
Sbjct: 363 SCWWKKGKVLYVRISQGKSVE 425
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,993,983
Number of Sequences: 28460
Number of extensions: 37878
Number of successful extensions: 167
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of query: 172
length of database: 4,897,600
effective HSP length: 84
effective length of query: 88
effective length of database: 2,506,960
effective search space: 220612480
effective search space used: 220612480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146775.16