BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146760.13 + phase: 0 /pseudo/partial
(612 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eI... 199 1e-51
TC17892 similar to UP|Q8SXI8 (Q8SXI8) RE28061p, partial (4%) 167 6e-42
BP071239 134 3e-32
BI418105 133 7e-32
TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like... 123 8e-29
TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation ... 122 1e-28
BI420699 114 5e-26
AV416800 109 1e-24
TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA ... 107 4e-24
TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%) 103 8e-23
TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation... 100 9e-22
TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation... 99 3e-21
TC8003 homologue to PIR|S52023|S52023 translation initiation fac... 99 3e-21
TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%) 91 7e-19
TC19728 similar to UP|K1CI_HUMAN (P35527) Keratin, type I cytosk... 87 8e-18
AV411087 82 3e-16
TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, p... 80 1e-15
BP034176 79 3e-15
BF177506 76 2e-14
TC10734 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90 (AT5g... 74 7e-14
>TC14417 homologue to UP|AAR23806 (AAR23806) Initiation factor eIF4A-15,
complete
Length = 1563
Score = 199 bits (505), Expect = 1e-51
Identities = 127/390 (32%), Positives = 202/390 (51%), Gaps = 1/390 (0%)
Frame = +2
Query: 144 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 203
++F + L E L + I + +P+ +Q+ I G D++ AQ+G+GKTA FC I+
Sbjct: 206 DSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 385
Query: 204 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 263
+ G V ALVL+PTREL+ QI + R GV+V GG +
Sbjct: 386 QQLDYG-----------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 532
Query: 264 NQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVE 323
+ R L+ GV +V TPGR+ D+L R + I+ LDEAD ML GF+ QI I +
Sbjct: 533 REDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQ 712
Query: 324 QMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESD 383
+ G Q +FSAT P E + F++ + + V R + + I Q V++ +
Sbjct: 713 LLP----GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE 880
Query: 384 -KRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQE 442
K L DL +++FV T++ D L + N+ + HGD Q
Sbjct: 881 WKLETLCDLYETLAITQ-------SVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNT 1039
Query: 443 REAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKG 502
R+ +R F+SG++ +L+ TD+ ARG+D+ V+ V+N+DLP ++Y+HRIGR+GR G+KG
Sbjct: 1040RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 1219
Query: 503 LATAFFNENNTSMARSLQDLMQEANQEVPA 532
+A F +++ M +Q +E+P+
Sbjct: 1220VAINFVTLDDSRMLSDIQKFYNVTVEELPS 1309
>TC17892 similar to UP|Q8SXI8 (Q8SXI8) RE28061p, partial (4%)
Length = 557
Score = 167 bits (422), Expect = 6e-42
Identities = 97/158 (61%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Frame = +2
Query: 1 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPS--APAPAAPA 58
MRSSWADLAANSAAEN + ++A N+ A TRP YVPPHLRNR PS +PA ++
Sbjct: 122 MRSSWADLAANSAAENN-----APSSATNNSQAPTRPAYVPPHLRNRPPSHHSPAESSAP 286
Query: 59 FDNSGSRWAPPPRNDYRGGGGGRGGGGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQE 118
+ RW P R+DYR G R GG NRGG RE NPF D +D E + QE
Sbjct: 287 PPAAAPRWGAP-RDDYRSSGPPRWGG---NRGGRD---REVNPFDDVEDVPEEAFGD-QE 442
Query: 119 NTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALN 156
NTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLG+ALN
Sbjct: 443 NTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALN 556
>BP071239
Length = 429
Score = 134 bits (338), Expect = 3e-32
Identities = 75/153 (49%), Positives = 92/153 (60%)
Frame = +3
Query: 429 FPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 488
F A IHGD+SQ ER+ L F++G +P+LVATDVAARGLDI + VVN+D P ++DY
Sbjct: 9 FGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 188
Query: 489 VHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKN 548
VHRIGRTGRAG GLA FF E + A L +++ ANQ VP+ L + R GGG N
Sbjct: 189 VHRIGRTGRAGATGLAYTFFAEQDAKYASDLIKVLEGANQRVPSELRDMSTR---GGGMN 359
Query: 549 RRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSG 581
R RR GS RG S Y +SG
Sbjct: 360 RS-----------RRWGSGGRGDSGYGARNDSG 425
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 75 RGGGGGRGGGGYGNRGGGGW 94
R G GGRG GYG R G+
Sbjct: 369 RWGSGGRGDSGYGARNDSGY 428
>BI418105
Length = 600
Score = 133 bits (335), Expect = 7e-32
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 3/199 (1%)
Frame = +3
Query: 101 PFADQDDSEEPVT---QEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQ 157
PF+ +D EEP + EQ+ T D + + + SG +VP PV TF + +
Sbjct: 33 PFS-KDFYEEPPSISGMSEQDVT----DYRKSLAIRVSGFDVPKPVKTFEDCGFPPPVMS 197
Query: 158 NIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPR 217
I++ Y KPT +Q A+P+ L GRD++ A+TGSGKTAAF P+I IM QP +
Sbjct: 198 AIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEE 374
Query: 218 GVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDIL 277
G P+ ++ +PTREL+ QI+ E++KF+ G+RV YGG +Q +EL+ G +I+
Sbjct: 375 G-----PIGVICAPTRELAQQIYLESKKFAKSYGIRVSAVYGGMSKLEQFKELKAGCEIV 539
Query: 278 VATPGRLVDLLERARVSLS 296
VATPGRL+D+L+ ++++
Sbjct: 540 VATPGRLIDMLKMKALTMT 596
>TC18826 similar to UP|Q9LUW5 (Q9LUW5) DEAD-box RNA helicase-like protein,
partial (29%)
Length = 782
Score = 123 bits (309), Expect = 8e-29
Identities = 64/161 (39%), Positives = 103/161 (63%)
Frame = +3
Query: 169 PVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALV 228
P+QR + ++ GRD++ A+TG+GKT AF PI+ I+ R PLAL
Sbjct: 318 PIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIKFNAKHGRGRD-----PLALA 482
Query: 229 LSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288
L+PTREL+ Q+ +E + + + GG PI+QQ+R+L+ GVD++V TPGR++DLL
Sbjct: 483 LAPTRELAKQVEKEF--YDSAPNLDTICVNGGTPISQQMRQLDYGVDVVVGTPGRIIDLL 656
Query: 289 ERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPP 329
R ++L ++++ LDEAD+ML +GF+ + KI+++ +PP
Sbjct: 657 NRGALNLKEVQFMVLDEADQMLQIGFQEDVEKILDR--LPP 773
>TC17926 similar to UP|IF43_NICPL (P41380) Eukaryotic initiation factor 4A-3
(eIF4A-3) (eIF-4A-3), partial (72%)
Length = 982
Score = 122 bits (307), Expect = 1e-28
Identities = 91/313 (29%), Positives = 153/313 (48%), Gaps = 4/313 (1%)
Frame = +2
Query: 128 EDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMAC 187
+D+ ET+ G + +F E+ + + L + I + + KP+ +Q+ A+ + GRD++A
Sbjct: 125 DDMDFETTEG--VKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQ 298
Query: 188 AQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFS 247
AQ+G+GKT+ + + T VR V L+LSPTREL+ Q +
Sbjct: 299 AQSGTGKTSMIALTVCQVVDTS---------VREV--QVLILSPTRELASQTEKVILAVG 445
Query: 248 YQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEAD 307
++ GG + + +R+LE GV ++ TPGR+ D+++R + I+ L LDE+D
Sbjct: 446 DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRTIKMLVLDESD 625
Query: 308 RMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGS 367
ML GF+ QI + +PP Q L SAT P EI + + F+++ + + V R
Sbjct: 626 EMLSRGFKDQIYDVYRY--LPPD--LQVCLISATLPHEILEITNKFMTDPVRILVKRDEL 793
Query: 368 STDLIDQRVEYVQES----DKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHW 423
+ + I Q V+ D L D L +A ++F TK+ D L
Sbjct: 794 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA----------VIFCNTKRKVDWLTEK 943
Query: 424 LCLNNFPATTIHG 436
+ NNF +++HG
Sbjct: 944 MRNNNFTVSSMHG 982
>BI420699
Length = 396
Score = 114 bits (285), Expect = 5e-26
Identities = 52/91 (57%), Positives = 68/91 (74%)
Frame = +2
Query: 408 LVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARG 467
L+F+ETKKG D L L + +PA +IHGD++Q ER+ L FKSG +PI+ ATDVAARG
Sbjct: 41 LIFMETKKGCDQLTRQLTMEGWPALSIHGDKNQAERDWVLAEFKSGISPIMTATDVAARG 220
Query: 468 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 498
LD+ + V+N+D P+ + DYVHRIGRTGRA
Sbjct: 221 LDVKDIKFVINYDFPSSLQDYVHRIGRTGRA 313
>AV416800
Length = 174
Score = 109 bits (272), Expect = 1e-24
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +3
Query: 173 HAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALV 228
HAIPI L GRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTV PLALV
Sbjct: 6 HAIPIFLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVYPLALV 173
>TC12527 homologue to UP|Q9SWV9 (Q9SWV9) Ethylene-responsive RNA helicase,
partial (26%)
Length = 690
Score = 107 bits (268), Expect = 4e-24
Identities = 49/81 (60%), Positives = 63/81 (77%)
Frame = +1
Query: 424 LCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPN 483
L ++ +PA +IHGD+SQ ER+ L FKSG +PI+ ATDVAARGLD+ V +V+N+D P
Sbjct: 28 LRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPG 207
Query: 484 DIDDYVHRIGRTGRAGKKGLA 504
++DYVHRIGRTGRAG KG A
Sbjct: 208 SLEDYVHRIGRTGRAGAKGTA 270
>TC12625 similar to UP|Q84TG1 (Q84TG1) At3g09720, partial (34%)
Length = 549
Score = 103 bits (257), Expect = 8e-23
Identities = 62/191 (32%), Positives = 105/191 (54%)
Frame = +2
Query: 292 RVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLAS 351
+V LS + YL LDE+D++ + QI +++ P +R LFSAT P ++ A
Sbjct: 2 KVDLSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSI-IRS--LFSATLPDFVEDRAR 172
Query: 352 DFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV 411
+ + + + + VGR ++++ I Q++ + + + L A R + + LVF+
Sbjct: 173 ELMHDAVRVIVGRKNTASETIKQKLVFTGSEEGK------LLAIRQSFAESLNPPVLVFL 334
Query: 412 ETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIP 471
++K+ A L L +N IH D SQ+ERE A+ +F++G T +L+ATDV ARG+D
Sbjct: 335 QSKERAKELYGELAFDNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFK 514
Query: 472 HVAHVVNFDLP 482
V V+N+D P
Sbjct: 515 AVNCVINYDFP 547
>TC8702 homologue to UP|IF42_ARATH (P41377) Eukaryotic initiation factor
4A-2 (eIF4A-2) (eIF-4A-2), partial (32%)
Length = 595
Score = 100 bits (248), Expect = 9e-22
Identities = 45/124 (36%), Positives = 77/124 (61%)
Frame = +2
Query: 409 VFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGL 468
+FV T++ D L + N+ + HGD Q R+ +R F+SG++ +L+ TD+ ARG+
Sbjct: 2 IFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 181
Query: 469 DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQ 528
D+ V+ V+N+DLP ++Y+HRIGR+GR G+KG+A F +++ M +Q +
Sbjct: 182 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYHVTVE 361
Query: 529 EVPA 532
E+P+
Sbjct: 362 ELPS 373
>TC9937 homologue to UP|IF43_NICPL (P41380) Eukaryotic initiation factor
4A-3 (eIF4A-3) (eIF-4A-3), partial (28%)
Length = 651
Score = 98.6 bits (244), Expect = 3e-21
Identities = 43/104 (41%), Positives = 71/104 (67%)
Frame = +2
Query: 428 NFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 487
+F +++HGD Q+ER+A + F++G+T +L+ TDV ARGLD+ V+ V+N+DLPN+ +
Sbjct: 14 DFTVSSMHGDMPQRERDAIMAEFRAGSTRVLITTDVWARGLDVQQVSLVINYDLPNNREL 193
Query: 488 YVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVP 531
Y+HRIGR+GR G+KG+A F ++ + R ++ E+P
Sbjct: 194 YIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMP 325
>TC8003 homologue to PIR|S52023|S52023 translation initiation factor
eIF-4A.14 - common tobacco {Nicotiana tabacum;} ,
partial (34%)
Length = 708
Score = 98.6 bits (244), Expect = 3e-21
Identities = 44/126 (34%), Positives = 78/126 (60%)
Frame = +1
Query: 407 TLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAAR 466
+++FV T++ D L + + + HGD Q R+ +R F+SG++ +L+ TD+ AR
Sbjct: 22 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 201
Query: 467 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEA 526
G+D+ V+ V+N+DLP ++Y+HRIGR+GR G+KG+A F +++ M +Q
Sbjct: 202 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVV 381
Query: 527 NQEVPA 532
+E+P+
Sbjct: 382 VEELPS 399
>TC14722 homologue to UP|Q9ZS12 (Q9ZS12) RNA helicase, partial (64%)
Length = 1448
Score = 90.5 bits (223), Expect = 7e-19
Identities = 65/233 (27%), Positives = 109/233 (45%), Gaps = 2/233 (0%)
Frame = +3
Query: 301 LALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSN-YIF 359
L +DEAD++L F+P I ++++ + RQ +++SAT+P ++ +L Y+
Sbjct: 309 LVMDEADKLLSPEFQPSIEQLIQFLSPN----RQILMYSATYPVTVKDFKERYLRKPYVI 476
Query: 360 LAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADA 419
+ + + I Q +V+E K L L + N +++F + +
Sbjct: 477 NLMDEL--TLKGITQFYAFVEERQKVHCLNTLFSKLQINQ-------SIIFCNSVNRVEL 629
Query: 420 LEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNF 479
L + + IH Q R F++G LV TD+ RG+DI V V+NF
Sbjct: 630 LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 809
Query: 480 DLPNDIDDYVHRIGRTGRAGKKGLATAFFN-ENNTSMARSLQDLMQEANQEVP 531
D P + + Y+HR+GR+GR G GLA E+ ++ R Q+L E Q P
Sbjct: 810 DFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 968
>TC19728 similar to UP|K1CI_HUMAN (P35527) Keratin, type I cytoskeletal 9
(Cytokeratin 9) (K9) (CK 9), partial (3%)
Length = 400
Score = 87.0 bits (214), Expect = 8e-18
Identities = 53/103 (51%), Positives = 61/103 (58%)
Frame = -2
Query: 510 ENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSR 569
+N+ S+A+SL DLMQE N EVPAWL R+AARSSFGGG+NRRS + +R
Sbjct: 399 DNHASLAKSLADLMQEPNPEVPAWLLRYAARSSFGGGRNRRSRRPFWWP*LPKRRFFLPG 220
Query: 570 GGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPXVTTAW 612
SGGGYGASGGY GGYGG G VT AW
Sbjct: 219 WF*SLRCPETSGGGYGASGGY-AGGYGG-------GSGVTRAW 115
>AV411087
Length = 420
Score = 82.0 bits (201), Expect = 3e-16
Identities = 52/134 (38%), Positives = 74/134 (54%), Gaps = 1/134 (0%)
Frame = +3
Query: 333 RQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYV-QESDKRSHLMDL 391
RQT LFSAT P+++++LA + LS+ + + VG VG + + I Q V+ V +S+K L++
Sbjct: 36 RQTSLFSATMPRKVEKLAREILSDPVRVIVGEVGMANEDITQVVQVVPSDSEKLPWLLEK 215
Query: 392 LHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFK 451
L G TLVF K D +E L F +HGD+ Q R L+ FK
Sbjct: 216 LPETIDQGD------TLVFASKKATVDDIETQLSQRGFKVAALHGDKDQASRMDILQKFK 377
Query: 452 SGNTPILVATDVAA 465
SG +L+ATDVAA
Sbjct: 378 SGVYHVLIATDVAA 419
>TC15066 homologue to UP|Q8H1A5 (Q8H1A5) DEAD box RNA helicase, partial
(44%)
Length = 699
Score = 79.7 bits (195), Expect = 1e-15
Identities = 52/146 (35%), Positives = 75/146 (50%)
Frame = +3
Query: 145 TFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIIS 204
+F + L E L + I + KP+ +Q+ I G D++ AQ+G+GKTA FC I+
Sbjct: 279 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 458
Query: 205 GIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN 264
+ T C ALVL+PTREL+ QI + R GV+V GG +
Sbjct: 459 QLDYSL----------TECQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR 605
Query: 265 QQLRELERGVDILVATPGRLVDLLER 290
+ R L GV ++V TPGR+ D+L R
Sbjct: 606 EDQRILSSGVHVVVGTPGRVFDMLRR 683
>BP034176
Length = 604
Score = 78.6 bits (192), Expect = 3e-15
Identities = 50/147 (34%), Positives = 74/147 (50%)
Frame = +2
Query: 144 NTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPII 203
+TF + L E L + I + +P+ +Q+ G D++ AQ+G+GKTA FC I+
Sbjct: 182 DTFDSMGLHENLLRGIYAYGFERPSAIQQRGXVPFCKGLDVIQQAQSGTGKTATFCSGIL 361
Query: 204 SGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPI 263
+ V ALVL+PTREL+ QI + R GV+V GG +
Sbjct: 362 QQL-----------NYELVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 508
Query: 264 NQQLRELERGVDILVATPGRLVDLLER 290
+ R L+ GV +V TPGR+ D+L R
Sbjct: 509 REDQRILQAGVHTVVGTPGRVFDMLRR 589
>BF177506
Length = 447
Score = 75.9 bits (185), Expect = 2e-14
Identities = 40/109 (36%), Positives = 62/109 (56%)
Frame = +2
Query: 128 EDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMAC 187
ED + G +P P+ ++ E L + L +++ + Y P+P+Q AIP+ L RD++
Sbjct: 128 EDFNISYKGSKIPRPMRSWDESRLSQELLKSVEKAGYKTPSPIQMAAIPLGLQQRDVIGV 307
Query: 188 AQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELS 236
A+TGSGKTAAF P++S I P P A+V++PTREL+
Sbjct: 308 AETGSGKTAAFVLPMLSYITRLPPISEENEAEG---PYAVVMAPTRELA 445
>TC10734 homologue to UP|Q93VJ8 (Q93VJ8) AT5g11200/F2I11_90
(AT5g11170/F2I11_60), partial (15%)
Length = 513
Score = 73.9 bits (180), Expect = 7e-14
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = +3
Query: 448 RSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAF 507
+ FK G T ILVATD+ RG+DI V V+N+D+P+ D Y+HR+GR GR G KGLA F
Sbjct: 318 KGFKEGQTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 497
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,696,039
Number of Sequences: 28460
Number of extensions: 152793
Number of successful extensions: 5408
Number of sequences better than 10.0: 452
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4189
length of query: 612
length of database: 4,897,600
effective HSP length: 96
effective length of query: 516
effective length of database: 2,165,440
effective search space: 1117367040
effective search space used: 1117367040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146760.13