TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146759.10 + phase: 1 /partial
         (178 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14150 homologue to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3...   339  1e-94
TC14148 similar to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3 (...   335  2e-93
TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a hom...   335  2e-93
BP076331                                                               48  3e-08
TC10017 UP|RR3_LOTJA (Q9BBP8) Chloroplast 30S ribosomal protein ...    43  3e-05
TC8811 similar to UP|AAP04330 (AAP04330) G-protein-coupled recep...    30  0.24
TC11139                                                                26  4.5
TC9015 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (...    25  7.7
AV427555                                                               25  7.7
AV428223                                                               25  7.7

>TC14150 homologue to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3
           (AT5g35530/MOK9_14), partial (91%)
          Length = 1075

 Score =  339 bits (870), Expect = 1e-94
 Identities = 170/176 (96%), Positives = 173/176 (97%)
 Frame = +3

Query: 1   EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 261 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 440

Query: 61  GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG
Sbjct: 441 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 620

Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPV 176
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE+EYIRPAAV A ++EVPV V
Sbjct: 621 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSAEEVEVPVAV 788


>TC14148 similar to UP|Q9FJA6 (Q9FJA6) 40S ribosomal protein S3
           (AT5g35530/MOK9_14), partial (91%)
          Length = 1032

 Score =  335 bits (860), Expect = 2e-93
 Identities = 168/174 (96%), Positives = 172/174 (98%)
 Frame = +3

Query: 1   EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
           EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 258 EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 437

Query: 61  GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG
Sbjct: 438 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 617

Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPV 174
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIH+PKEE+EYI+PAAV A+DIEVPV
Sbjct: 618 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSASDIEVPV 779


>TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a homolog -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1191

 Score =  335 bits (860), Expect = 2e-93
 Identities = 169/174 (97%), Positives = 172/174 (98%)
 Frame = +1

Query: 1   EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
           EKGRRIRELTS+VQKRFKFPEN+VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 310 EKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 489

Query: 61  GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
           GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG
Sbjct: 490 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 669

Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPV 174
           VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY RP AV+ANDIEVPV
Sbjct: 670 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPV 828


>BP076331 
          Length = 358

 Score = 48.1 bits (113), Expect(2) = 3e-08
 Identities = 24/42 (57%), Positives = 29/42 (68%)
 Frame = -1

Query: 102 QPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTP 143
           QP+ +Y +S VRH+LLRQ        IMLD DPKGK GP+TP
Sbjct: 358 QPLNNYNESVVRHILLRQ--------IMLD*DPKGKHGPQTP 257



 Score = 24.3 bits (51), Expect(2) = 3e-08
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 143 PLPDIVTIHTPK 154
           PL +IVTIHTPK
Sbjct: 260 PLLNIVTIHTPK 225


>TC10017 UP|RR3_LOTJA (Q9BBP8) Chloroplast 30S ribosomal protein S3,
           complete
          Length = 1185

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 34/132 (25%), Positives = 65/132 (48%), Gaps = 2/132 (1%)
 Frame = +1

Query: 2   KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 61
           K RRI EL   VQK+  +    + +   ++ N        AE +  +L   ++ R+A   
Sbjct: 262 KPRRIEELQINVQKKMNYVNRKLNIAITRIANAYRDPNILAEFIAGQLKNRVSFRKAMKK 441

Query: 62  VLRFVMESGAKGCEVIVSGKLRAQRAKSMKF-KDGYM-ISSGQPVKDYIDSAVRHVLLRQ 119
            +    ++G KG +V ++G++  +    +++ ++G + + + +   DY    VR +    
Sbjct: 442 AIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTI---Y 612

Query: 120 GVLGIKVKIMLD 131
           GVLGIKV I L+
Sbjct: 613 GVLGIKVWIFLN 648


>TC8811 similar to UP|AAP04330 (AAP04330) G-protein-coupled receptor GPR34
           type 2a (Fragment), partial (6%)
          Length = 675

 Score = 30.0 bits (66), Expect = 0.24
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 140 PKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
           P+ P+P  +  +TP  E   +    VV   + VPVPVPV
Sbjct: 172 PEGPMPVPIPPNTPGVELNGVVEPVVVEEGVPVPVPVPV 56


>TC11139 
          Length = 659

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 59  CYGVLRFVMESGAKGCEVIVSGKLR 83
           C+G+   + E  + GC VIVS  LR
Sbjct: 270 CFGIEPSIPEGKSYGCAVIVSSDLR 344


>TC9015 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (12%)
          Length = 639

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -2

Query: 117 LRQGVLGIKV------KIMLDWDPKGKQGPKTPLP 145
           L++G LG K+      ++  D +PKG +GPK   P
Sbjct: 146 LKEGTLGSKLVA*EGFEVPKDSEPKGFEGPKDAEP 42


>AV427555 
          Length = 346

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 106 DYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAV 165
           D+I   VRH+LL +  LG+K+                P+     +H  + E  YIR + V
Sbjct: 213 DFICVHVRHLLLHRRELGVKL--------------VHPITKHRGVHRWRLERGYIRLSVV 76

Query: 166 VANDIEVPV 174
           + N + + V
Sbjct: 75  LRNRLHLVV 49


>AV428223 
          Length = 340

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (56%)
 Frame = +3

Query: 68  ESGAKGCEVIVSGKLRAQRAKSMKFKDG 95
           ESG  G EVIV   +R+  +   +F DG
Sbjct: 183 ESGVSGGEVIVRADVRSLESVGRRFIDG 266


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,447,083
Number of Sequences: 28460
Number of extensions: 27782
Number of successful extensions: 140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of query: 178
length of database: 4,897,600
effective HSP length: 84
effective length of query: 94
effective length of database: 2,506,960
effective search space: 235654240
effective search space used: 235654240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)