TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146758.8 - phase: 0 /pseudo
         (35 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial...    52  2e-08
AV406833                                                               33  0.010

>TC10209 similar to UP|Q9SJQ5 (Q9SJQ5) At2g36500 protein, partial (26%)
          Length = 659

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   MAARRVDAVLLTDANGLLFGIMTDKDTATRVISEG 35
           MAARRV AVLLTD+N LL GI+TDKD   RV++EG
Sbjct: 349 MAARRVGAVLLTDSNALLSGILTDKDVGARVVAEG 453


>AV406833 
          Length = 419

 Score = 33.5 bits (75), Expect = 0.010
 Identities = 16/18 (88%), Positives = 17/18 (93%)
 Frame = +2

Query: 1   MAARRVDAVLLTDANGLL 18
           MAARRVDAVLLTD+N LL
Sbjct: 362 MAARRVDAVLLTDSNALL 415


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,819
Number of Sequences: 28460
Number of extensions: 796
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 35
length of database: 4,897,600
effective HSP length: 11
effective length of query: 24
effective length of database: 4,584,540
effective search space: 110028960
effective search space used: 110028960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)