TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146758.6 + phase: 0 /pseudo
         (515 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               122  1e-28
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    91  3e-19
BP056651                                                               54  5e-12
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...    55  4e-08
CN825682                                                               48  3e-06
TC11618 homologue to AAQ62405 (AAQ62405) At5g09680, partial (10%)      28  4.7
TC15030 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like pr...    27  8.0

>TC18710 
          Length = 843

 Score =  122 bits (306), Expect = 1e-28
 Identities = 69/192 (35%), Positives = 107/192 (54%), Gaps = 3/192 (1%)
 Frame = +2

Query: 326 GPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRP 385
           G DG+N  F ++    +KD +   +  F    ++   IN T + LIPKV +P+ +N FRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 386 ISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANE---AVDEARKL 442
           IS    LYK+++K+   RL+  +  +IS  QS F++ RQI D +LI  E   A++    L
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547

Query: 443 KKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDE 502
            ++  + K+D  KAYD V+W +L+S +    F   W K I + VS  + +  +NG    +
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727

Query: 503 FPFRRGLRQGDP 514
              +RGLRQGDP
Sbjct: 728 LLPQRGLRQGDP 763


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 91.3 bits (225), Expect = 3e-19
 Identities = 61/197 (30%), Positives = 106/197 (52%), Gaps = 5/197 (2%)
 Frame = -3

Query: 222 RIQWLREGDANSKFFHSVLASRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSV 280
           RI+ L+ GD N++FFH+    RR  N +  I    G+ VEG   + EA   +F + + S 
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 411

Query: 281 NVE--RPSLTNLQF*SLSVAEGVG--LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIK 336
            ++  R  L  +      V + +   L    S DE+K AV+     K+PG DGIN  F +
Sbjct: 410 PLQYLRECLAPIP---KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQ 240

Query: 337 EFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKIL 396
           +    +K+++   + +F  +G+L   +N T + LIPK+ + + +  FRPIS    +YK++
Sbjct: 239 QNREIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVI 60

Query: 397 AKLLANRLRVVIGSVIS 413
           +K++  RL+  + ++IS
Sbjct: 59  SKIIVARLKPDMVNLIS 9


>BP056651 
          Length = 564

 Score = 53.5 bits (127), Expect(2) = 5e-12
 Identities = 22/42 (52%), Positives = 29/42 (68%)
 Frame = +3

Query: 45  LVDLPLGGRNFTWFKGDGKSMSRLDRFLLSEDWCLVWPNCLQ 86
           L D+PL GR +TW + +GK+ SRLDRFL+S  W   W +C Q
Sbjct: 432 LDDIPLVGRKYTWVRSNGKARSRLDRFLVSHQWNTSWXDCAQ 557



 Score = 33.9 bits (76), Expect(2) = 5e-12
 Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
 Frame = +1

Query: 7   CVCGDFNAIRSREERRSV--SVGQVASDFSHFNSFID 41
           C+ GDFN++R  EERR         A +   FN FID
Sbjct: 313 CMAGDFNSVRRSEERRGTHGEGSSGAGEMEEFNDFID 423


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 33/96 (34%), Positives = 48/96 (49%)
 Frame = -3

Query: 154 KISLKEWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLN 213
           K++L EWH  +      +I++LK +L  L     S     E+  EI      +  L R  
Sbjct: 435 KLALTEWHHQNFSRADKEIAELKNQLEHLQNYSNS----GEDWQEIKQRKMRLKDLWRQE 268

Query: 214 TSICWQQSRIQWLREGDANSKFFHSVLASRRRRNSL 249
                Q+SRI+WL+ GD N+KFFH+    RR RN +
Sbjct: 267 ELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRI 160


>CN825682 
          Length = 626

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 32/92 (34%), Positives = 42/92 (44%), Gaps = 3/92 (3%)
 Frame = -3

Query: 10  GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSM---S 66
           GDFN I   +E+      Q  +    F  F+D   L+DL L G  FTW       +    
Sbjct: 288 GDFNEILHHQEKEGAR-DQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRNGLVTKE 112

Query: 67  RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCP 98
           RLDR L++  W L +PN   +A     SDH P
Sbjct: 111 RLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16


>TC11618 homologue to AAQ62405 (AAQ62405) At5g09680, partial (10%)
          Length = 514

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +2

Query: 434 EAVDEARKLKKDLLLFKVDFEKAYDSVDW 462
           E+ ++    KK ++  KV FEK Y  +DW
Sbjct: 428 ESPEQMISAKKPIVRTKVPFEKGYSQMDW 514


>TC15030 similar to UP|Q9LVH6 (Q9LVH6) Aldose 1-epimerase-like protein,
           partial (94%)
          Length = 1212

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +3

Query: 110 PRPSRMLKCWTDIPGYRQFVSN 131
           P  SR+L  WT++PG + + +N
Sbjct: 786 PSSSRVLNLWTNVPGMQFYTAN 851


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,679,550
Number of Sequences: 28460
Number of extensions: 139720
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of query: 515
length of database: 4,897,600
effective HSP length: 94
effective length of query: 421
effective length of database: 2,222,360
effective search space: 935613560
effective search space used: 935613560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)