BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146758.2 + phase: 0
(74 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8272 similar to UP|AAQ72568 (AAQ72568) Ripening-related protei... 90 9e-20
TC14707 weakly similar to UP|AAQ72568 (AAQ72568) Ripening-relate... 84 5e-18
TC14706 weakly similar to UP|AAQ72568 (AAQ72568) Ripening-relate... 77 5e-16
AV406506 26 1.6
AV410198 25 2.1
TC14744 UP|C7DB_LOTJA (O22307) Cytochrome P450 71D11 (Fragment)... 25 2.7
TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprote... 25 3.5
TC9731 25 3.5
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 24 4.6
AI967724 24 6.1
TC12499 24 6.1
AV776605 23 7.9
TC10138 homologue to UP|ATPL_SYNP1 (Q05366) ATP synthase C chain... 23 7.9
TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete 23 7.9
AV409549 23 7.9
BP083853 23 7.9
TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - ... 23 7.9
>TC8272 similar to UP|AAQ72568 (AAQ72568) Ripening-related protein, partial
(64%)
Length = 757
Score = 89.7 bits (221), Expect = 9e-20
Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Frame = +3
Query: 1 MVLAGKLSTEIGIKASSDKFFKLFASNIHEVQNICESVHETKLHQGDEWHH-SDSVKHWT 59
MVLAGKLSTEIGIKA + KF+ LFA +H+VQN CE VH TKLH+G++WH ++KHWT
Sbjct: 75 MVLAGKLSTEIGIKAPAAKFYDLFAKQLHDVQNHCERVHHTKLHEGEDWHEVGSALKHWT 254
Query: 60 HV 61
+V
Sbjct: 255 YV 260
>TC14707 weakly similar to UP|AAQ72568 (AAQ72568) Ripening-related protein,
partial (63%)
Length = 731
Score = 84.0 bits (206), Expect = 5e-18
Identities = 37/61 (60%), Positives = 47/61 (76%)
Frame = +1
Query: 1 MVLAGKLSTEIGIKASSDKFFKLFASNIHEVQNICESVHETKLHQGDEWHHSDSVKHWTH 60
MVLAGKL TE+G+K +DKF+ LF + +H+VQ E VHETK+H+GD WH SVKHWT+
Sbjct: 55 MVLAGKLITEVGVKTPADKFYNLFTTQLHDVQKHAEKVHETKVHEGD-WHGIGSVKHWTY 231
Query: 61 V 61
V
Sbjct: 232 V 234
>TC14706 weakly similar to UP|AAQ72568 (AAQ72568) Ripening-related protein,
partial (39%)
Length = 701
Score = 77.4 bits (189), Expect = 5e-16
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Frame = +3
Query: 1 MVLAGKLSTEIGIKASSDKFFKLFASNIHEVQNICESVHETKLHQGDEWHHSDSVKHWTH 60
MVLAGKL TEI +K+ + KF+ LFA +H+ Q I +SVHETK+H+GD WH SVK WT+
Sbjct: 33 MVLAGKLITEIELKSPAVKFYNLFAKQLHDAQKISDSVHETKVHEGD-WHGIGSVKQWTY 209
Query: 61 V---RVLSSKQRL 70
V +V++ +R+
Sbjct: 210 VVDGKVITCLERI 248
>AV406506
Length = 399
Score = 25.8 bits (55), Expect = 1.6
Identities = 16/61 (26%), Positives = 30/61 (48%)
Frame = -3
Query: 9 TEIGIKASSDKFFKLFASNIHEVQNICESVHETKLHQGDEWHHSDSVKHWTHVRVLSSKQ 68
+++ K ++ +FF +SN+ + + ES + L EW S+S + VL K+
Sbjct: 358 SDVPFKLAATRFFAANSSNLIKYPELAESPFKPILSSSAEW--SESERSAEESAVLKVKK 185
Query: 69 R 69
R
Sbjct: 184 R 182
>AV410198
Length = 337
Score = 25.4 bits (54), Expect = 2.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 20 FFKLFASNIHEVQNICESVHETKLHQGDEWHHSDSVKHWTHVR 62
F L S+I ++QN H ++LH +S +++H T+ R
Sbjct: 75 FTALLPSSIPQIQNPTRQFHHSELHLRHPNPNSPTLRHPTNRR 203
>TC14744 UP|C7DB_LOTJA (O22307) Cytochrome P450 71D11 (Fragment) , complete
Length = 1753
Score = 25.0 bits (53), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 13 IKASSDKFFKLFASNIHEVQNICESVHET 41
++A K F+L +SN H+V+++C H+T
Sbjct: 444 LEALHCKSFELVSSNHHKVKSLCLWNHKT 358
>TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprotein,
chloroplast precursor (28RNP), partial (34%)
Length = 637
Score = 24.6 bits (52), Expect = 3.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 44 HQGDEWHHS 52
HQG +WHHS
Sbjct: 229 HQGQQWHHS 203
>TC9731
Length = 662
Score = 24.6 bits (52), Expect = 3.5
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = -2
Query: 28 IHEVQNICESVHE 40
+H++Q IC S+HE
Sbjct: 658 VHQIQPICHSIHE 620
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 24.3 bits (51), Expect = 4.6
Identities = 17/61 (27%), Positives = 26/61 (41%), Gaps = 9/61 (14%)
Frame = -1
Query: 4 AGKLSTEIGIKASSDKFFKLF-----ASNIHEVQNICESVHETKLHQGDEW----HHSDS 54
A + TE I+ ++F + IHE+QN ET + G E+ HH S
Sbjct: 848 AFSIGTERSIQKIDTAITRVFQLHIKTTQIHEIQN*TSDHQETNTNTGQEFAPFRHHLHS 669
Query: 55 V 55
+
Sbjct: 668 I 666
>AI967724
Length = 317
Score = 23.9 bits (50), Expect = 6.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 35 CESVHETKLHQGDEWHHSDSVKHWTHV 61
CE +H D W + V HW H+
Sbjct: 216 CEEFANDGVHDVDGW*YCSLV*HWYHL 296
>TC12499
Length = 424
Score = 23.9 bits (50), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 24 FASNIHEVQNICESVHETKLH 44
F + + +++ +CE VHE LH
Sbjct: 313 FGNRLLQLELLCEEVHELLLH 251
>AV776605
Length = 323
Score = 23.5 bits (49), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (71%)
Frame = -3
Query: 22 KLFASNIHEVQNICESVHETKL 43
K+F S++++VQ + V ETK+
Sbjct: 318 KIFRSHVNQVQTVRHGVCETKV 253
>TC10138 homologue to UP|ATPL_SYNP1 (Q05366) ATP synthase C chain
(Lipid-binding protein) , partial (15%)
Length = 550
Score = 23.5 bits (49), Expect = 7.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 20 FFKLFASNIHEVQNIC 35
F FAS IHEV+N C
Sbjct: 83 FANPFASKIHEVRNKC 36
>TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete
Length = 1793
Score = 23.5 bits (49), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 44 HQGDEWHHSDSVKHWTH 60
H D + HS+S++ WTH
Sbjct: 580 HIFDRFDHSNSLRVWTH 530
>AV409549
Length = 428
Score = 23.5 bits (49), Expect = 7.9
Identities = 17/75 (22%), Positives = 28/75 (36%), Gaps = 14/75 (18%)
Frame = -2
Query: 13 IKASSDKFFKLFASNIHEVQNI--------------CESVHETKLHQGDEWHHSDSVKHW 58
I ++ F L S + E + I C+SVH+ + + E H +S
Sbjct: 394 INPTTTLFLHLVVSELREAEQINTPLRMK*SSRLRRCDSVHKGRTSKCTEIHDRESQPET 215
Query: 59 THVRVLSSKQRLLHK 73
R+ KQ + K
Sbjct: 214 EENRIQRQKQEIPRK 170
>BP083853
Length = 455
Score = 23.5 bits (49), Expect = 7.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 43 LHQGDEWHHSDSVKH 57
LHQG EW HS +H
Sbjct: 315 LHQGLEWIHSQLQEH 359
>TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - mung bean
{Vigna radiata;} , partial (20%)
Length = 536
Score = 23.5 bits (49), Expect = 7.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -2
Query: 36 ESVH---ETKLHQGDEWHHSDSVKHWTHVRVLSSKQR 69
ES H E + H G E H TH+ VLS K+R
Sbjct: 412 ESFHGAKEKEYHNGKEDHED------THILVLSEKER 320
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,405,521
Number of Sequences: 28460
Number of extensions: 17543
Number of successful extensions: 134
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of query: 74
length of database: 4,897,600
effective HSP length: 50
effective length of query: 24
effective length of database: 3,474,600
effective search space: 83390400
effective search space used: 83390400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)
Medicago: description of AC146758.2