TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146757.5 - phase: 0 /pseudo
         (588 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV770592                                                              216  8e-57
TC11335                                                                89  2e-18
BP058305                                                               84  6e-17
TC15537                                                                52  4e-07
AW719969                                                               27  9.3

>AV770592 
          Length = 489

 Score =  216 bits (550), Expect = 8e-57
 Identities = 104/157 (66%), Positives = 122/157 (77%)
 Frame = +2

Query: 135 AVVKTTKGFKFGGAIFAEPNCWSMLKGGLIADTTGVAELYFESNNTSVEIWVDNVSLQPF 194
           ++VKTT+G K  GA  AE N    L+     +T+G AELYFES NTSVEIW+D++SLQPF
Sbjct: 17  SIVKTTEGLKLAGATLAESNVGLCLRVVSQTNTSGTAELYFESENTSVEIWIDSISLQPF 196

Query: 195 TEKQWRSHQELSIEKDRKRKVVVRAVNEQGHPLPNASISLTMKRPGFPFGSAINKNILNN 254
           T+KQW SHQ  S EK RK KV+V+A++EQG+PLPNASI +T KR GFPFGSAIN NILNN
Sbjct: 197 TQKQWSSHQHQSTEKARKSKVLVQAIDEQGNPLPNASIHITQKRLGFPFGSAINHNILNN 376

Query: 255 NAYQDWFASRFTVTTFENEMKWYTNEYAQGKDNYFDA 291
            AYQ+WF SRFTVTTFENEMKWY  E  QGK NY+ A
Sbjct: 377 GAYQNWFTSRFTVTTFENEMKWYMTETTQGKPNYYYA 487


>TC11335 
          Length = 447

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 41/95 (43%), Positives = 55/95 (57%)
 Frame = +2

Query: 470 NQALYFEQVLREAHSHPGIQGIVMWTAWSPQGCYRICLTDNNFKNLPAGDVVDQLINEWG 529
           +Q  Y + +LRE ++HP +QGI+M+      G  +  L D NFKN P GDVVD LI EWG
Sbjct: 2   HQEDYVDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWG 181

Query: 530 RAEKSGTTDQNGYFEASLFHGDYEIEINHPIKKKS 564
                   D  G  + SL HGDY++ + HP K+ S
Sbjct: 182 TGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQIS 286


>BP058305 
          Length = 303

 Score = 84.0 bits (206), Expect = 6e-17
 Identities = 38/66 (57%), Positives = 49/66 (73%), Gaps = 1/66 (1%)
 Frame = -3

Query: 524 LINEWGRAEK-SGTTDQNGYFEASLFHGDYEIEINHPIKKKSNFTHHIKVLSKDEFKKTK 582
           L++EW  ++  SGTTDQNG  E SLFHGDYE+EI+HP KK    THH++V+  DE  K+ 
Sbjct: 301 LLHEWXXSKTLSGTTDQNGNLEVSLFHGDYEVEISHPAKKNYTLTHHVQVVPNDESGKSS 122

Query: 583 QFIQLS 588
           QF+QLS
Sbjct: 121 QFVQLS 104


>TC15537 
          Length = 589

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
 Frame = +1

Query: 461 TELDVAS--QPNQALYFEQVLREAHSHPGIQGIVMWTAWSPQGCYRICLTDNNFKNLPAG 518
           TELDV+S  +  +A   E +LREA +HP ++GI++W  W           D++      G
Sbjct: 4   TELDVSSIYEHVRADDLEVMLREAMAHPAVEGIMLWGFWE-----LFMSRDHSHLVNAEG 168

Query: 519 DVVD------QLINEWGRAEKSGTTDQNGYFEASLFHGDYEIEINHPIKKKS 564
           D+ +       L  EW  + K    D++G F    FHG Y +E+  P KK S
Sbjct: 169 DINEAGKRFLDLKREW-LSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTKKIS 321


>AW719969 
          Length = 263

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (53%)
 Frame = -1

Query: 185 WVDNVSLQPFTEKQWRSHQELSIEKDRKRKVVVRA 219
           W++   L+ F E +W    +L   ++RKR  + RA
Sbjct: 257 WLEEEGLREFEEVRWLRVLDLRTRRERKRVWITRA 153


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,676,956
Number of Sequences: 28460
Number of extensions: 146649
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of query: 588
length of database: 4,897,600
effective HSP length: 95
effective length of query: 493
effective length of database: 2,193,900
effective search space: 1081592700
effective search space used: 1081592700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)