TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146757.11 - phase: 0 /pseudo
         (348 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP058840                                                              225  1e-59
TC9276 weakly similar to PIR|T00565|T00565 geranylgeranyl-diphos...   176  5e-45
TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...    28  3.0
TC8232 similar to UP|AAQ57205 (AAQ57205) O-acetylserine (Thiol)l...    27  6.6
TC18861                                                                26  8.7
TC7959 homologue to UP|MDHG_CITLA (P19446) Malate dehydrogenase,...    26  8.7

>BP058840 
          Length = 464

 Score =  225 bits (573), Expect = 1e-59
 Identities = 111/131 (84%), Positives = 117/131 (88%)
 Frame = +1

Query: 17  KDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLHLVEKEAVANWVLSFQV 76
           KDLHVTF QMMY LLP+PYESQEINHLTLAYF+IS LDILN+LH VEKEAVAN V SFQV
Sbjct: 70  KDLHVTFLQMMYQLLPSPYESQEINHLTLAYFIISGLDILNALHSVEKEAVANGVXSFQV 249

Query: 77  QRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYCALAILKIVGYDLSSLD 136
             GT  DPNNGQFYGFHGS+TSQFPPDENGV  HNNSHLAS+YCALAILKIVGYDLSSLD
Sbjct: 250 HPGTKPDPNNGQFYGFHGSRTSQFPPDENGVXLHNNSHLASSYCALAILKIVGYDLSSLD 429

Query: 137 SESMSSSMKNL 147
           SE M SSM+NL
Sbjct: 430 SELMLSSMRNL 462


>TC9276 weakly similar to PIR|T00565|T00565 geranylgeranyl-diphosphate
           geranylgeranyltransferase I beta                chain
           homolog At2g39550 - Arabidopsis thaliana {Arabidopsis
           thaliana;}, partial (35%)
          Length = 607

 Score =  176 bits (446), Expect = 5e-45
 Identities = 93/128 (72%), Positives = 101/128 (78%)
 Frame = +2

Query: 217 LSG*WDTLKTMFSQVVICLL**ICRCCWTGSCRDKGLMVDFKVDLINLLIHVMHFGLEAF 276
           LS  WD LKT+FSQVV+ LL* +C   WTG C  +GLMVDFKVDLIN +IHVMHFGLE F
Sbjct: 2   LSDSWDLLKTVFSQVVLRLL*LMCHYYWTGPCSGRGLMVDFKVDLINQVIHVMHFGLELF 181

Query: 277 *EFSGAAILLTIKLYVDFCFPVNTSMVVSANSLETFQIYTIPTMDLQLSACWKNLA*SHF 336
           * F GAA L    L V+FC P NTSMVVSANSL++FQ YT PTMDL LSACWKNLA*SHF
Sbjct: 182 *GF*GAATL*IRMLSVNFCLPANTSMVVSANSLKSFQTYTTPTMDLVLSACWKNLA*SHF 361

Query: 337 VLNLELLI 344
           VLN ELLI
Sbjct: 362 VLNWELLI 385


>TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (44%)
          Length = 1606

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 26/118 (22%), Positives = 48/118 (40%)
 Frame = +2

Query: 95  SKTSQFPPDENGVFHHNNSHLASTYCALAILKIVGYDLSSLDSESMSSSMKNLQQPDGSF 154
           S T+Q     N V    N H         +L  V + +       ++  +K  +  D ++
Sbjct: 686 SGTTQAGSSGNSVRRRRNVH--------GVLNTVSWGILMPLGAVIARYLKVFKSADPAW 841

Query: 155 MPIHIGGETDLRFVYCAGWITGMEWTRKKSRITY*IASLMMVGLD*FLVQNLMVVQLI 212
             +H+  +T    V  AGW TG++     + I Y  ++   +G+  F +  L V  L+
Sbjct: 842 FYLHVTCQTAAYIVGVAGWGTGLKLGSDSAGIEY--STHRALGITLFCLGTLQVFALL 1009


>TC8232 similar to UP|AAQ57205 (AAQ57205) O-acetylserine (Thiol)lyase
          (Fragment), partial (42%)
          Length = 646

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (56%)
 Frame = +3

Query: 40 INHLTLAYFVISSLDILNSLHLVEKEAVANWVLSF 74
          +NHL + Y +  +L ++ S  LV   ++A W L F
Sbjct: 15 LNHLKVQYCLEGNLALIRSKELVLDSSLAFWTLIF 119


>TC18861 
          Length = 841

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (58%)
 Frame = +1

Query: 166 RFVYCAGWITGMEWTRKKSRIT 187
           R ++C GW+TG    R+ S  T
Sbjct: 481 RIIWCNGWLTGFSRQRRSSEPT 546


>TC7959 homologue to UP|MDHG_CITLA (P19446) Malate dehydrogenase,
           glyoxysomal precursor  , partial (46%)
          Length = 571

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 18/81 (22%), Positives = 33/81 (40%)
 Frame = -2

Query: 12  TTTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLHLVEKEAVANWV 71
           T+  D  +H +   +   L       +  NH T  +    S D     ++++ +    WV
Sbjct: 387 TSRYDHQVHASECTLKLRL-----PQKATNHCTSVHVTNISCDTRGIDNIIKMKN*NQWV 223

Query: 72  LSFQVQRGTTNDPNNGQFYGF 92
              Q ++G TN P++ Q   F
Sbjct: 222 HLHQQRKGLTNSPSSPQDCNF 160


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.335    0.144    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,566,279
Number of Sequences: 28460
Number of extensions: 92872
Number of successful extensions: 798
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of query: 348
length of database: 4,897,600
effective HSP length: 91
effective length of query: 257
effective length of database: 2,307,740
effective search space: 593089180
effective search space used: 593089180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)