BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146756.6 - phase: 0
(281 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP034485 47 4e-06
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 42 2e-04
TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at... 39 0.001
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 39 0.001
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 39 0.001
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 37 0.004
BP043764 37 0.004
BI419973 36 0.006
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 36 0.006
BI418438 36 0.006
AV408970 36 0.008
TC13011 similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, par... 36 0.008
BP077528 36 0.008
AV427815 35 0.011
TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10... 35 0.011
TC15582 weakly similar to GB|AAO23575.1|27764908|BT003010 At5g60... 35 0.011
AV780663 35 0.011
AV427017 35 0.011
BP030058 35 0.011
TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12... 35 0.014
>BP034485
Length = 485
Score = 47.0 bits (110), Expect = 4e-06
Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 3/95 (3%)
Frame = +3
Query: 180 GGGGGSSGSSKGGGGGGTNTKEQKKVVN-NGKG--EKGKERASRYNDGGGSGSGDKRNKN 236
GG G KGGGGG +++ ++KK + NG G K + GGG G G+ NKN
Sbjct: 6 GGNKSKEGKQKGGGGGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKN 185
Query: 237 IESNSKRNVGRPPKKAAETVASTKRGRESSASGGK 271
N +N G K K G++ GGK
Sbjct: 186 --KNKNKNNGGGNNKG-------KEGKKGGGGGGK 263
Score = 40.8 bits (94), Expect = 3e-04
Identities = 34/88 (38%), Positives = 41/88 (45%), Gaps = 9/88 (10%)
Frame = +3
Query: 154 KKNNGAAGFLNRIKKNESVEVLRSGSGGG------GGSSGSSKGGGGGG--TNTKEQKKV 205
K+ G G + KK ++ + +GGG G S KGGGGGG T K + K
Sbjct: 30 KQKGGGGGDSSSDKKKKT----KDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKNKNKN 197
Query: 206 VNNGKG-EKGKERASRYNDGGGSGSGDK 232
NNG G KGKE GGG G DK
Sbjct: 198 KNNGGGNNKGKEGK---KGGGGGGKLDK 272
Score = 32.3 bits (72), Expect = 0.093
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = +3
Query: 131 GSSANKPAETPKLKNKAEGVSDKK-----KNNGAAGFLNRIKKN-ESVEVLRSGSGGGGG 184
G + A K KNK G + K K G G L++I + + ++ G GG
Sbjct: 153 GGGGGETANKNKNKNKNNGGGNNKGKEGKKGGGGGGKLDKIDFDFQDFDIPSHGKSGG-- 326
Query: 185 SSGSSKGGGGGGTNTK 200
KGGGGGG K
Sbjct: 327 -----KGGGGGGKGNK 359
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/57 (40%), Positives = 28/57 (48%)
Frame = +1
Query: 178 GSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSGDKRN 234
GS G GG G GGGGGG + + +G G SRY GGG G G+ R+
Sbjct: 409 GSRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGG-------SRYGSGGGGGGGNWRS 558
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/59 (38%), Positives = 27/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 176 RSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKG-KERASRYNDGGGSGSGDKR 233
R G GGGGG G GGGGG ++ G G +G Y GGG G G +R
Sbjct: 319 RGGGGGGGGRGGGGYGGGGG-----RREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRR 480
>TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
subunit precursor, partial (3%)
Length = 1235
Score = 38.9 bits (89), Expect = 0.001
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 19/168 (11%)
Frame = +1
Query: 75 SDVKPTLKPSYSETDEEEPPKAKEKPVTGARSRRSNKNLSSNASNKKPPSNSTPRTGSSA 134
SD +P+ +P+ + D EE RS + N S+K P + G
Sbjct: 172 SDREPSPEPNNNLNDFEEDVD------DWGNRERSQTPVYDNDSSKSKPRKRLIKKGGGG 333
Query: 135 NKPAETPKLKNKAE------------GVSDKKKNNGAAGFLNRIKKNESVEVLRSGSGGG 182
+ P L+++ E G KK+ +G +G + K ++ S SGG
Sbjct: 334 GSQSVAPDLEDEVEEEDFPVRSDEGEGRKRKKEKDGGSGKKEKRLKGDT-RFGSSSSGGK 510
Query: 183 GGSS-GSSKGGGGGGT------NTKEQKKVVNNGKGEKGKERASRYND 223
GGS GS+K G GG KE + G E +E +D
Sbjct: 511 GGSKFGSAKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGVRNLDD 654
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/59 (35%), Positives = 28/59 (46%)
Frame = -2
Query: 172 VEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSG 230
VE+ GG G G GGGGGG + + GKG KG+ ++ GG +G G
Sbjct: 830 VEIGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGE--GGCFDGGGWNGLG 660
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 176 RSGSGGGGGSSGS-SKGGGGGGTNTKEQKKVVNNGKGEKGK 215
RSG GGGGG G S+G GGGGTN + G+G+ GK
Sbjct: 287 RSGGGGGGGGGGRRSRGSGGGGTNGGRR------GRGKGGK 183
Score = 32.7 bits (73), Expect = 0.071
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 SNTITQKSDSLPPNTPLSRPDSLSKHKPPILVCRKRSSIPVKPSTTTFSHKGDHKPIIND 68
S+ + S PP +P S + S PP S+ P PS+T P
Sbjct: 204 SSAAVGPTSSTPPTSPTSAAAATSSATPPSPSPPPTSASPPPPSSTPNGTPPSSSPATTP 383
Query: 69 KKERPSSDVKPT-----LKPSYSETDE 90
RPS+ PT P +S ++E
Sbjct: 384 SPSRPSTPSSPTRASLPSAPGFSSSEE 464
Score = 32.7 bits (73), Expect = 0.071
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Frame = -3
Query: 176 RSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKER----ASRYNDGGGSGSGD 231
R GSG G S+GG G G+ + G +G+ R R GGG G G
Sbjct: 413 RGGSGRSRGRRRCSRGGRGRGSIWR------RGGWRRRGRSRWR*GRGRSGGGGGGGGGG 252
Query: 232 KRNKNIESNSKRNVGRPPKKAAETVASTKRGRESSASGGK 271
+R++ R K + V RE GG+
Sbjct: 251 RRSRGSGGGGTNGGRRGRGKGGKRVGRG*GSRE*CRQGGR 132
Score = 31.2 bits (69), Expect = 0.21
Identities = 30/132 (22%), Positives = 43/132 (31%)
Frame = +3
Query: 10 NTITQKSDSLPPNTPLSRPDSLSKHKPPILVCRKRSSIPVKPSTTTFSHKGDHKPIINDK 69
N ++ + PP P P+ + PP S P+ SH P +
Sbjct: 45 NLVSPIQTTPPPPPPPPSPNHRNNLPPPFPPSLTTSFSTSSPA----SHPLPSLPSPSSA 212
Query: 70 KERPSSDVKPTLKPSYSETDEEEPPKAKEKPVTGARSRRSNKNLSSNASNKKPPSNSTPR 129
P+S PT S + P + P T A PP +STP
Sbjct: 213 AVGPTSSTPPTSPTSAAAATSSATPPSPSPPPTSA---------------SPPPPSSTPN 347
Query: 130 TGSSANKPAETP 141
++ PA TP
Sbjct: 348 GTPPSSSPATTP 383
Score = 29.3 bits (64), Expect = 0.78
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 3/125 (2%)
Frame = +3
Query: 17 DSLPPNTPLSRPDSLSKHKP---PILVCRKRSSIPVKPSTTTFSHKGDHKPIINDKKERP 73
++LPP P S S S P P+ SS V P+++T P
Sbjct: 111 NNLPPPFPPSLTTSFSTSSPASHPLPSLPSPSSAAVGPTSST----------------PP 242
Query: 74 SSDVKPTLKPSYSETDEEEPPKAKEKPVTGARSRRSNKNLSSNASNKKPPSNSTPRTGSS 133
+S S + PP P + + SS A+ P STP + +
Sbjct: 243 TSPTSAAAATSSATPPSPSPPPTSASPPPPSSTPNGTPPSSSPATTPSPSRPSTPSSPTR 422
Query: 134 ANKPA 138
A+ P+
Sbjct: 423 ASLPS 437
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 37.0 bits (84), Expect = 0.004
Identities = 30/122 (24%), Positives = 47/122 (37%), Gaps = 19/122 (15%)
Frame = +1
Query: 178 GSGGGGGSSGSSKGGGGGGTNTK----------EQKKVVNNGKGEKGKERASRYNDGGGS 227
G GGGGG G GGGGGG++ K ++ + G G + R+
Sbjct: 310 GGGGGGGRGGGRSGGGGGGSDMKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSY 489
Query: 228 G-------SGDKRNKNIESNSKRNVGR--PPKKAAETVASTKRGRESSASGGKDKRPKKR 278
G R +++ + + + R PP +A E E S G R ++R
Sbjct: 490 GRRSYSPRGRSPRRRSVSPHGRGSYSRSPPPYRARE---------EVPYSNGNGLRERRR 642
Query: 279 SK 280
S+
Sbjct: 643 SR 648
Score = 27.3 bits (59), Expect = 3.0
Identities = 33/129 (25%), Positives = 47/129 (35%), Gaps = 11/129 (8%)
Frame = +1
Query: 162 FLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRY 221
F +R +++ L +G S +S+GGGGGG G R
Sbjct: 217 FDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGG-----------------GGGRGGGR 345
Query: 222 NDGGGSGSGDK-----------RNKNIESNSKRNVGRPPKKAAETVASTKRGRESSASGG 270
+ GGG GS K R + S R R P + S GR S + G
Sbjct: 346 SGGGGGGSDMKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRR---SPSYGRRSYSPRG 516
Query: 271 KDKRPKKRS 279
+ P++RS
Sbjct: 517 RS--PRRRS 537
>BP043764
Length = 479
Score = 37.0 bits (84), Expect = 0.004
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = -2
Query: 162 FLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRY 221
F + + ++ V RSG G GGG G GGGGG + Q +V + KG R
Sbjct: 409 FTSSAPLSSAISVSRSGGGNGGGGGGGG-GGGGGESLLVSQSLLVRA*EDLKGFLRGFEV 233
Query: 222 NDGGGSGSG 230
G G G G
Sbjct: 232 GAGLGLGFG 206
Score = 25.8 bits (55), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = -1
Query: 178 GSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKER 217
GSGG G +GGG GG +E+ + K E G E+
Sbjct: 152 GSGGVVGVRRRFEGGGNGGGVAEEEWCLGGMDKCEVGNEK 33
>BI419973
Length = 551
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +2
Query: 167 KKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGG 226
KK E +++ G GG S K G G G N K ++GK++ GGG
Sbjct: 2 KKGEVIDLPVKMKGKGGNFSNEGKKGNGDGGN-----------KSKEGKQKGG----GGG 136
Query: 227 SGSGDKRNKNIESN 240
S DK+ K + N
Sbjct: 137 DSSSDKKKKTKDKN 178
Score = 34.3 bits (77), Expect = 0.024
Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 146 KAEGVSDKKKNNGAAG-FLNRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQKK 204
K E + K G G F N KK +G GG G KGGGGG +++ ++KK
Sbjct: 5 KGEVIDLPVKMKGKGGNFSNEGKKG-------NGDGGNKSKEGKQKGGGGGDSSSDKKKK 163
Query: 205 VVNNGKG 211
+ G
Sbjct: 164 TKDKNGG 184
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +3
Query: 145 NKAEGVSDKKKNNGAAGFLNRIKKNESVEVLRSGSGGG-GGSSGSSKGGGGGGTNTKEQK 203
NK S + N+G G+ + K SG G G GG+ G GGG GT
Sbjct: 267 NKTSSYSTDEPNSGGGGYDSGYNKTAYSTDEPSGGGYGTGGAGGGYSTGGGYGTGGG--- 437
Query: 204 KVVNNGKGEKGKERASRYNDGGGSGSGDKRNKNIESNSK 242
G+ G GGG G+ D N+ E + K
Sbjct: 438 ---GGGEYSTGGGGGGYSTGGGGYGNDDSGNRRDEVDYK 545
Score = 32.3 bits (72), Expect = 0.093
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 178 GSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSGDKRNKNI 237
G+GGGGG S+ GGGGGG +T G G G + + D +K +K +
Sbjct: 423 GTGGGGGGEYST-GGGGGGYST---------GGGGYGNDDSGNRRDEVDYKEEEKHHKKL 572
Query: 238 E 238
E
Sbjct: 573 E 575
Score = 29.3 bits (64), Expect = 0.78
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 179 SGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSG 230
S GGGG S+ GGG G ++ ++ V+ + EK ++ + G + +G
Sbjct: 453 STGGGGGGYSTGGGGYGNDDSGNRRDEVDYKEEEKHHKKLEHLGELGTTAAG 608
>BI418438
Length = 431
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 178 GSGGGGGSSGS---SKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSG 230
G GGGGG + GGGG G + +E+++ G GEKG Y +G G G G
Sbjct: 260 GEGGGGGMVVVVVVAVGGGGEGEDEEEKREGEERGHGEKG-----GYCEGEGGGGG 108
>AV408970
Length = 195
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 180 GGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSGSGDK 232
GGGGG+ G GG E++ +G G +G E A R GGG G+G++
Sbjct: 180 GGGGGAGGEGADGG-------EEEVAGGDGGGGEGAEAAER-GTGGGEGAGEE 46
Score = 26.6 bits (57), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 173 EVLRSGSGGGGGSSGSSKGGGGGGTNTKEQ 202
E + G GGGG + +++ G GGG E+
Sbjct: 135 EEVAGGDGGGGEGAEAAERGTGGGEGAGEE 46
>TC13011 similar to UP|Q9JM93 (Q9JM93) SRp25 nuclear protein, partial (10%)
Length = 593
Score = 35.8 bits (81), Expect = 0.008
Identities = 26/102 (25%), Positives = 43/102 (41%), Gaps = 10/102 (9%)
Frame = -3
Query: 188 SSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGG---SGSGDKRNKNIESNSKRN 244
+ KG G ++K++KK E+ +E + +D +G + + S +
Sbjct: 576 AKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEESDHSEDEVNGEAEVKRSRGGKTSGKG 397
Query: 245 VGRPPKKAAETVASTKRGR-------ESSASGGKDKRPKKRS 279
G+ PKK+ V + RGR S S GK P+K S
Sbjct: 396 RGKAPKKSGAEVKGSGRGRGGAAAAANKSGSSGKRGSPRKSS 271
>BP077528
Length = 403
Score = 35.8 bits (81), Expect = 0.008
Identities = 30/91 (32%), Positives = 40/91 (42%), Gaps = 3/91 (3%)
Frame = -3
Query: 145 NKAEGVSDKKKNNGAAGFLNRIKK---NESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKE 201
N+ E +S+ N ++G L IK N S + +S GSS G G N +
Sbjct: 332 NQDEKLSESGHPNDSSGSLPVIKSKLPNGSEIMNKSSKSSVKGSSSVDDNGHGVLKNGSK 153
Query: 202 QKKVVNNGKGEKGKERASRYNDGGGSGSGDK 232
+KVV K K E A N GGS +G K
Sbjct: 152 TRKVVTGSK--KPSEAADDINKNGGSSTGKK 66
>AV427815
Length = 421
Score = 35.4 bits (80), Expect = 0.011
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +1
Query: 46 SIPVKPSTTTFSHKGDHKPIINDKKERPSSDVKPTLKPSYSETDEEEPPKAKEKPVTGAR 105
++ + P+T SH+ H+ N++ S + P KPS + + ++ PK++ + + A
Sbjct: 133 NLSLLPTTNYLSHQSSHQSTFNERSPTSPSSL*PK-KPSMT*KNSQQSPKSRTRSASAAA 309
Query: 106 SRRSNKNLSSNA 117
RS + +S A
Sbjct: 310 CPRSARRSTSTA 345
>TC16616 similar to GB|AAM47365.1|21360499|AY113057 AT4g32140/F10N7_50
{Arabidopsis thaliana;}, partial (27%)
Length = 883
Score = 35.4 bits (80), Expect = 0.011
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 164 NRIKKNESVEVLRSGSGGGGGSSGSSKGGGGGG 196
NR + + E R G GGGG+ G + GGGGG
Sbjct: 173 NRARSDPKQERQRRGRDGGGGAGGGGRDGGGGG 75
>TC15582 weakly similar to GB|AAO23575.1|27764908|BT003010
At5g60980/MSL3_100 {Arabidopsis thaliana;}, partial
(16%)
Length = 1053
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Frame = +3
Query: 143 LKNKAEGVSDKKKNNGAAGFLNRIK--KNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTK 200
L N+ + +++ NN A + + +N+ + R GGG+ G +GGG G N
Sbjct: 435 LDNRRLSIEERRANNDRARYPSGRGGYRNDRNDSFRGRGNFGGGNFGGGRGGGYNGRNDF 614
Query: 201 EQKKVVN------NGKGEKGKERASRYNDGGGSGSGDKR 233
E++ + N G E A R G +G R
Sbjct: 615 ERRNEFSGRPRGGNNMGRNNGETAPRSYQNGQTGQNGGR 731
>AV780663
Length = 568
Score = 35.4 bits (80), Expect = 0.011
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 175 LRSGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKG----EKGKERASRYNDGG 225
+ SGGGGG G GGG GG E+ + G+G G ERA + GG
Sbjct: 156 VEGSSGGGGGRGG---GGGSGGKGA*EEARGRRRGRGG*GFSGGPERAKKKRPGG 1
>AV427017
Length = 429
Score = 35.4 bits (80), Expect = 0.011
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +3
Query: 42 RKRSSIPVKPSTTTFSHKGDHKPIINDKKERPSSDVKPTLKPSYSETDEEEPPKAKEKPV 101
R R+ +P+TTT P + ++ PT S + + PP + P
Sbjct: 36 RNRNPTTAQPTTTTAEAAAASAPA-SAAASAAAAAASPTA--SSASSARSSPPSSSSPPS 206
Query: 102 TGARSRRSNKNLSSNASNKKPPS--NSTPRTGSSANKPAETPKLKNKAEGVS 151
+ S S+ SSN+++ KP S + TP T S+ P+ +P AE S
Sbjct: 207 PASSSG*SSAPTSSNSASPKPHSLNSPTPTTLSTTISPSTSPSETLTAESAS 362
>BP030058
Length = 455
Score = 35.4 bits (80), Expect = 0.011
Identities = 21/51 (41%), Positives = 22/51 (42%)
Frame = +1
Query: 178 GSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGEKGKERASRYNDGGGSG 228
G GG GG G GGGGGG +G G G E DGGG G
Sbjct: 298 GGGGEGGGGGGGDGGGGGGD---------GHGSGGGGGE-----GDGGGGG 408
Score = 28.5 bits (62), Expect = 1.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 178 GSGGGGGSSGSSKGGGGGGT 197
GSGGGGG GGGGGG+
Sbjct: 364 GSGGGGGEGD---GGGGGGS 414
>TC17912 weakly similar to GB|AAP37829.1|30725614|BT008470 At5g12470
{Arabidopsis thaliana;}, partial (18%)
Length = 507
Score = 35.0 bits (79), Expect = 0.014
Identities = 15/36 (41%), Positives = 18/36 (49%)
Frame = +3
Query: 168 KNESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQK 203
KN + +G GG GG G GGGGGG E +
Sbjct: 201 KNSRIFSAGNGGGGTGGGDGGGGGGGGGGDGESEDR 308
Score = 33.1 bits (74), Expect = 0.054
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 169 NESVEVLRSGSGGGGGSSGSSKGGGGGGTNTKEQK 203
+++ + +G+GGGG G GGGGGG E +
Sbjct: 198 SKNSRIFSAGNGGGGTGGGDGGGGGGGGGGDGESE 302
Score = 32.7 bits (73), Expect = 0.071
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +3
Query: 177 SGSGGGGGSSGSSKGGGGGGTNTKEQKKVVNNGKGE 212
S GGGG+ G GGGGGG + + + +GE
Sbjct: 219 SAGNGGGGTGGGDGGGGGGGGGGDGESEDRDRNRGE 326
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.299 0.122 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,260,881
Number of Sequences: 28460
Number of extensions: 69336
Number of successful extensions: 2069
Number of sequences better than 10.0: 375
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of query: 281
length of database: 4,897,600
effective HSP length: 89
effective length of query: 192
effective length of database: 2,364,660
effective search space: 454014720
effective search space used: 454014720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146756.6