BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146755.4 + phase: 0
(446 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12815 similar to PIR|T46125|T46125 calmodulin-binding heat-sho... 203 4e-53
CB828559 170 4e-43
AW719924 32 0.16
BP051616 31 0.47
TC18860 similar to UP|Q940L4 (Q940L4) AT3g62590/F26K9_20, partia... 29 1.4
BP075520 28 3.1
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 28 3.1
TC20187 similar to UP|Q9FI59 (Q9FI59) Gb|AAD29063.1, partial (44%) 27 5.2
BP056155 27 6.8
AV410675 27 8.9
AV765900 27 8.9
>TC12815 similar to PIR|T46125|T46125 calmodulin-binding heat-shock-like
protein - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (25%)
Length = 447
Score = 203 bits (517), Expect = 4e-53
Identities = 100/144 (69%), Positives = 121/144 (83%), Gaps = 3/144 (2%)
Frame = +1
Query: 273 EKMLKDPRRLYAPGRLYHIVERKPFRLGRFPPVVRTAVPVDGRFEHIVLSCNATSDHAII 332
EK L+DPRRLYAPGRLYHIVERKPFR GRFPPVVRTAVPVDGRF+H+VLSCNAT+DHAI+
Sbjct: 4 EKKLRDPRRLYAPGRLYHIVERKPFRFGRFPPVVRTAVPVDGRFDHVVLSCNATADHAIL 183
Query: 333 WIEKEAQRALDLMMEKDNTMEVPAKQIMQRQKTMTR-HGQEYKAALQRAKTLDIPHAFTP 391
WIE+E+Q ALDLM+E D ME+PA+Q M+RQ+++ R H +EY+AAL+RA LDIP A++
Sbjct: 184 WIERESQWALDLMLENDQHMEIPAEQRMERQESLAREHSEEYQAALKRAVALDIPQAYS- 360
Query: 392 PSEYGTFD--EEGEESSRSEAESS 413
PS YGTF E GE+S RS + S
Sbjct: 361 PSSYGTFHELEAGEDSGRSSGKGS 432
>CB828559
Length = 503
Score = 170 bits (431), Expect = 4e-43
Identities = 71/106 (66%), Positives = 84/106 (78%)
Frame = +2
Query: 1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYE 60
MS+ICGLP++ECV CLAC RW WK+C +TAG++SE WG A EFE +PR CR ILAVYE
Sbjct: 185 MSVICGLPILECVSCLACSRWVWKKCRYTAGYESENWGLATAVEFEHIPRFCRVILAVYE 364
Query: 61 DDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHA 106
DD+RNP WAP GGYGINPD ++LRK Y D G PY++YLDHDHA
Sbjct: 365 DDIRNPQWAPKGGYGINPDCVILRKDYGDNEGCVTPYMIYLDHDHA 502
>AW719924
Length = 505
Score = 32.3 bits (72), Expect = 0.16
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 132 GKRKFDGGYVHNGLLKAAGWVMDAECE 158
G+RKFD G G K +GW++++ CE
Sbjct: 364 GERKFDRGLERRGGRKGSGWILESLCE 444
>BP051616
Length = 482
Score = 30.8 bits (68), Expect = 0.47
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -1
Query: 282 LYAPGRLYHIVERKPFR 298
LYAPG LYHIVE K FR
Sbjct: 185 LYAPGGLYHIVE*KHFR 135
>TC18860 similar to UP|Q940L4 (Q940L4) AT3g62590/F26K9_20, partial (29%)
Length = 606
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 135 KFDG--GYVHNGLLKAA-GWVMDAECEILRELVEKYPNYTLTFAGHSLGSGVAAALSMVV 191
KF+G VH G+ +AA G E+ L K T F GHSLG +A +++++
Sbjct: 123 KFEGLDVLVHRGIYEAAKGIYQQMLPEVHSHLRAKGSRATFRFTGHSLGGSLALLVNLML 302
Query: 192 V 192
+
Sbjct: 303 L 305
>BP075520
Length = 360
Score = 28.1 bits (61), Expect = 3.1
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -3
Query: 20 RWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAV 58
RW W RC +G + T + + P C + LA+
Sbjct: 190 RWRWDRCFRDSGRANRTRSESCPEVDRPGEPACSFTLAI 74
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 28.1 bits (61), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 4 ICGLPLVECVYCLACVRWAW 23
IC PL ++ L CV+W W
Sbjct: 111 ICSFPLYYLLFFLCCVQWEW 170
>TC20187 similar to UP|Q9FI59 (Q9FI59) Gb|AAD29063.1, partial (44%)
Length = 657
Score = 27.3 bits (59), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 158 EILRELVEKYPNYTLTFAGHSLGSGVA 184
++L+ + + Y + + AGHSLG+G A
Sbjct: 351 DVLKSMCDTYGSNNVCIAGHSLGAGFA 431
>BP056155
Length = 448
Score = 26.9 bits (58), Expect = 6.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 7 LPLVECVYCLACVRW 21
LP+ CV+CL CV W
Sbjct: 67 LPMKYCVFCLNCVYW 23
>AV410675
Length = 414
Score = 26.6 bits (57), Expect = 8.9
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = +3
Query: 87 YKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDYAVLLDNKLGKRKFDGGYVHNGLL 146
Y DT R+P Y V+A RG ++V D +L D ++ GL
Sbjct: 177 YNDTLYRSPRY-----------VIAFRG---TLTKSHSVSRDIEL-----DIHFIRQGLH 299
Query: 147 KAAGWVMDAECEILRELVEKYPNYTLTFAGHSLGSGVA 184
+ + D + +R +V + + AGHSLGS +A
Sbjct: 300 QTSR--SDIAVQAVRNMVATVGDSNVWLAGHSLGSAMA 407
>AV765900
Length = 862
Score = 26.6 bits (57), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = -1
Query: 8 PLVECVYCLACVRWAWKRCLHTAG 31
PLVEC C V+W C+H G
Sbjct: 295 PLVECSLCQ*PVKWGRVSCIH*RG 224
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,574,361
Number of Sequences: 28460
Number of extensions: 127712
Number of successful extensions: 582
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of query: 446
length of database: 4,897,600
effective HSP length: 93
effective length of query: 353
effective length of database: 2,250,820
effective search space: 794539460
effective search space used: 794539460
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146755.4