TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146755.12 + phase: 0 
         (57 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19154 similar to UP|AAS38575 (AAS38575) Short-chain dehydrogen...    65  3e-12
BP066875                                                               62  3e-11
AV428388                                                               44  5e-06
TC16362 similar to UP|HCD2_HUMAN (Q99714) 3-hydroxyacyl-CoA dehy...    41  4e-05
TC16576 weakly similar to UP|O76728 (O76728) Oligopeptidase B, p...    26  1.8
TC10884 similar to UP|Q80KM7 (Q80KM7) Envelope glycoprotein gpUL...    25  3.1
TC14930                                                                25  4.0
TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, part...    24  6.9
BP028676                                                               23  9.0

>TC19154 similar to UP|AAS38575 (AAS38575) Short-chain dehydrogenase Tic32,
           partial (44%)
          Length = 508

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 30/39 (76%), Positives = 34/39 (86%)
 Frame = +2

Query: 1   MWPFSKKGVSGFSGNSTAEKVTHGIDASGLTAIVTGLSS 39
           MWPFSKKG SGFS +STAE+VT GID +GLTA+VTG SS
Sbjct: 80  MWPFSKKGPSGFSSSSTAEQVTQGIDGTGLTAVVTGASS 196


>BP066875 
          Length = 521

 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 28/38 (73%), Positives = 31/38 (80%)
 Frame = +3

Query: 1   MWPFSKKGVSGFSGNSTAEKVTHGIDASGLTAIVTGLS 38
           MWPF +KG SGFS +STAE VTHGID +GL AIVTG S
Sbjct: 393 MWPFCRKGASGFSSSSTAEDVTHGIDGNGLVAIVTGRS 506


>AV428388 
          Length = 369

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 22/34 (64%), Positives = 26/34 (75%)
 Frame = +2

Query: 6  KKGVSGFSGNSTAEKVTHGIDASGLTAIVTGLSS 39
          + G SGF   STAE+VT GIDAS LTAI+TG +S
Sbjct: 38 RHGPSGFGSASTAEQVTEGIDASNLTAIITGGAS 139


>TC16362 similar to UP|HCD2_HUMAN (Q99714) 3-hydroxyacyl-CoA dehydrogenase
           type II  (Type II HADH) (Endoplasmic
           reticulum-associated amyloid beta-peptide binding
           protein) (Short-chain type dehydrogenase/reductase
           XH98G2) , partial (7%)
          Length = 613

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 20/32 (62%), Positives = 25/32 (77%)
 Frame = +2

Query: 8   GVSGFSGNSTAEKVTHGIDASGLTAIVTGLSS 39
           G SGF   +TAE+V+ GIDAS LTAI+TG +S
Sbjct: 119 GPSGFGSATTAEQVSEGIDASNLTAIITGGAS 214


>TC16576 weakly similar to UP|O76728 (O76728) Oligopeptidase B, partial
           (30%)
          Length = 1202

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 12/52 (23%), Positives = 26/52 (49%)
 Frame = -2

Query: 5   SKKGVSGFSGNSTAEKVTHGIDASGLTAIVTGLSSITLSYHFFNFKIFKHAL 56
           S KG    +  + + ++      S   A++  + S++L ++FF+ K   HA+
Sbjct: 415 STKGTPATAALNKSGRILRTAPISKPPALLPSMQSLSLEHNFFSIKYSAHAI 260


>TC10884 similar to UP|Q80KM7 (Q80KM7) Envelope glycoprotein gpUL73, partial
           (12%)
          Length = 523

 Score = 25.0 bits (53), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 40  ITLSYHFFNFKIFKHALC 57
           +  SY +F+ K+ KH LC
Sbjct: 348 VATSYDWFSLKLIKHTLC 401


>TC14930 
          Length = 331

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 13  SGNSTAEKVTHGIDASGLTAIVTGLSSIT--LSYHFFNFKIFKHAL 56
           SGN T      G  ASG+ ++   + S+   LSY+     IF  ++
Sbjct: 242 SGNITIRSSVEGFSASGVGSVPIKIKSLNPHLSYYSHTQSIFSFSI 105


>TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, partial (45%)
          Length = 970

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 39 SITLSYHFFNFKIFKHALC 57
          S++ ++ FFNFK+    LC
Sbjct: 31 SLSRAFKFFNFKVLNFFLC 87


>BP028676 
          Length = 520

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 11/38 (28%), Positives = 17/38 (43%)
 Frame = -2

Query: 7   KGVSGFSGNSTAEKVTHGIDASGLTAIVTGLSSITLSY 44
           K  S    N T   + HG+ ASG    +  + +IT  +
Sbjct: 465 KDTSELKMNGTKSMIGHGLGASGGLEAIATIKAITTGW 352


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 965,009
Number of Sequences: 28460
Number of extensions: 8201
Number of successful extensions: 59
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 57
length of database: 4,897,600
effective HSP length: 33
effective length of query: 24
effective length of database: 3,958,420
effective search space: 95002080
effective search space used: 95002080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)