TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146755.11 + phase: 0 
         (246 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW428746                                                               29  0.65
TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeod...    28  1.1
TC19727                                                                28  1.9
TC19571                                                                27  4.2
TC16619 homologue to UP|RR16_LOTJA (P58125) Chloroplast 30S ribo...    26  5.5
TC13386 similar to UP|AAS55542 (AAS55542) Ca2+ and calmodulin-de...    26  5.5
TC16480 similar to UP|Q9SGW4 (Q9SGW4) F1N19.8, partial (52%)           26  5.5
AV780053                                                               25  9.4
TC9863 similar to UP|Q9ESA4 (Q9ESA4) Glial growth factor (Fragme...    25  9.4

>AW428746 
          Length = 398

 Score = 29.3 bits (64), Expect = 0.65
 Identities = 12/41 (29%), Positives = 21/41 (50%)
 Frame = -3

Query: 198 HSGSYKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFKA 238
           H     R+    +  +++  F CF+ F  L+  YLP+ FK+
Sbjct: 306 HHSEESRLLPSSSGIISHFLFQCFSFFRILVLKYLPKNFKS 184


>TC9297 similar to UP|O65281 (O65281) ARABIDOPSIS THALIANA homeodomain
           protein AHDP (SP:P93041), partial (7%)
          Length = 598

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 Frame = +2

Query: 51  NCLAVVVVLSASGMVSPEDF---------GFVLFSVIYMCFISKVAFPSHPSKEQPPIF 100
           +C+  +++ SA+   S   F         GF+L+  +Y   IS+V      +KE+P +F
Sbjct: 224 SCITTILLCSATPYFSAPFFLLQNIEFLKGFILYIWVYRLRISEVWSQERTAKEEPQVF 400


>TC19727 
          Length = 532

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 16/71 (22%)
 Frame = +2

Query: 21 IEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLSASGM---------------- 64
          +  +EE+ ++LNK+T++      FLS        +VV LS +GM                
Sbjct: 23 LREREEEMQNLNKATNSKMFTFGFLS--------IVVCLSVAGMQLWHLKTFFERKKLL* 178

Query: 65 VSPEDFGFVLF 75
          V P+ F FVLF
Sbjct: 179VPPQIFLFVLF 211


>TC19571 
          Length = 492

 Score = 26.6 bits (57), Expect = 4.2
 Identities = 20/63 (31%), Positives = 28/63 (43%)
 Frame = +2

Query: 74  LFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILKIYVFIGAIIGLYAPIAYILHGIFEG 133
           L  ++ + F SKV    H    Q P      KIL    FI  I+ L A + Y+L  +  G
Sbjct: 191 LLLLVDLYFASKVFIKFHYISYQLP------KILNFITFILGIVILLALLRYLLFVLVRG 352

Query: 134 DKE 136
            +E
Sbjct: 353 SQE 361


>TC16619 homologue to UP|RR16_LOTJA (P58125) Chloroplast 30S ribosomal
           protein S16, partial (85%)
          Length = 593

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -2

Query: 219 WCFNLFGFLIPVYLPRVFKAYYSS 242
           W F L   L P++LP  F+ Y+ S
Sbjct: 91  WVFYLLSGLCPLFLPVFFRTYFFS 20


>TC13386 similar to UP|AAS55542 (AAS55542) Ca2+ and calmodulin-dependent
           protein kinase (Fragment), partial (25%)
          Length = 462

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = -1

Query: 216 MAFWCFNLFGFLIPVY------LPRVFKAYYSSQ 243
           MA W F+L  FL+P        LPR+ +  YSS+
Sbjct: 159 MATWVFSLPDFLVPFLTTENPPLPRISEISYSSE 58


>TC16480 similar to UP|Q9SGW4 (Q9SGW4) F1N19.8, partial (52%)
          Length = 877

 Score = 26.2 bits (56), Expect = 5.5
 Identities = 14/36 (38%), Positives = 18/36 (49%)
 Frame = +2

Query: 143 PHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNSR 178
           PH + + S  F         FSSPIRAF P+   S+
Sbjct: 86  PHCYSIPSSTF---------FSSPIRAFKPLFAESK 166


>AV780053 
          Length = 256

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (58%)
 Frame = -2

Query: 71  GFVLFSVIYMCFISKVAFPSHP 92
           GF+  S  Y+CF+ +  F  HP
Sbjct: 135 GFMYLSFTYVCFLVR*VFSPHP 70


>TC9863 similar to UP|Q9ESA4 (Q9ESA4) Glial growth factor (Fragment),
           partial (6%)
          Length = 625

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (70%)
 Frame = +1

Query: 70  FGFVLFSVIYMCFISKVAFPS 90
           +GFV F +I++C +S  + PS
Sbjct: 391 YGFV*FKLIFLCVLSTSSMPS 453


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,225,123
Number of Sequences: 28460
Number of extensions: 54251
Number of successful extensions: 403
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of query: 246
length of database: 4,897,600
effective HSP length: 88
effective length of query: 158
effective length of database: 2,393,120
effective search space: 378112960
effective search space used: 378112960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)