BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.6 + phase: 0
(346 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP044361 125 1e-29
TC14927 weakly similar to GB|BAC16200.1|22831356|AP005486 transp... 89 8e-19
TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5... 56 1e-08
TC19917 similar to GB|AAH46895.1|28461393|BC046895 wu:fb37e02 pr... 37 0.005
TC14434 34 0.041
AV409033 28 3.0
AV764758 28 3.0
TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier prote... 27 3.9
TC17322 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14... 27 6.6
BP040759 26 8.6
>BP044361
Length = 542
Score = 125 bits (314), Expect = 1e-29
Identities = 67/140 (47%), Positives = 87/140 (61%)
Frame = +1
Query: 11 RNIIRMGPQTFLKLCDMLEREGGLRPTRWSSVEEQVAKSLYILTHNAKNREVNFWFRRSG 70
R ++RM F KLCD+L + LR T +EEQ+A L I+ HN +NR + F+ SG
Sbjct: 124 REMLRMDKHVFHKLCDILRQRTLLRDTPGVMIEEQLAIFLNIIGHNERNRVIQERFQHSG 303
Query: 71 ETISRHLHQVLKAILELEEKFIVQPDGSTIPLEISSSTRFYPYFKDCVGAIDGTHIRVKV 130
ETISRH + VLKA+ L + ++QP T P EI +S R+YPYFKDC+G IDG I V
Sbjct: 304 ETISRHFNNVLKAVKSLSRE-VLQPPQPTTPPEILNSARYYPYFKDCIGVIDGMQIPAHV 480
Query: 131 SAKDAPRYRGRKEYPTQNVL 150
AKD R+R +K QNVL
Sbjct: 481 PAKDHSRFRNKKGILAQNVL 540
>TC14927 weakly similar to GB|BAC16200.1|22831356|AP005486 transposase-like
{Oryza sativa (japonica cultivar-group);} , partial
(11%)
Length = 539
Score = 89.4 bits (220), Expect = 8e-19
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 133 KDAPRYRGRKEYPTQNVLAACTFDLKFTYVLAGWEGSASDSRIIKNALTREDKLKIPEGK 192
+D PRYR RK + NVL C DLKF YVL GWEGSA DSR++++AL R++ L+IP GK
Sbjct: 3 EDKPRYRNRKGDISTNVLGVCGPDLKFIYVLPGWEGSAGDSRVLRDALRRQNHLQIPNGK 182
Query: 193 YYLVDAGF 200
Y+LVDAG+
Sbjct: 183 YFLVDAGY 206
>TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980),
partial (16%)
Length = 577
Score = 55.8 bits (133), Expect = 1e-08
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = +2
Query: 230 KELFNLRHASLRNAIERAFGVLKKRFEILSNSTEPAYGIKAQKLIIFACCILHNYLMSAE 289
KELFN RH LR AI R+F VLK RF IL + P Y + Q+ I+ A C+LHN + +
Sbjct: 5 KELFNHRHYFLRGAILRSFTVLKARFPILIPA--PQYSFQIQRDIVIAACVLHNIIRRED 178
Query: 290 PNE 292
N+
Sbjct: 179 RND 187
>TC19917 similar to GB|AAH46895.1|28461393|BC046895 wu:fb37e02 protein
{Danio rerio;} , partial (8%)
Length = 491
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +3
Query: 24 LCDMLEREGGLRPTRWSSVEEQVAKSLYILTHNAKNREVNFWFRRSGETISR 75
L +L + L TR E VA L+IL HN K R V+F + RS ETISR
Sbjct: 336 LATLL*EDTQLVRTRNVPTIEAVAMFLHILAHNLKYRVVHFTYYRSKETISR 491
>TC14434
Length = 644
Score = 33.9 bits (76), Expect = 0.041
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Frame = +2
Query: 233 FNLRHASLRNAIERAFGVLKKRFEILSNSTEPAYGIKAQKL--IIFACCILHNYL-MSAE 289
FN + ++ + AFG LK R+ L TE K + L ++ ACC+LHN M+ E
Sbjct: 125 FNEKVDEIQGLAKDAFGRLKGRWSCLQKRTEG----KLEDLPGVLGACCVLHNICEMNNE 292
Query: 290 P----------NEDLIAE-----VDAELANQNVSHD 310
+++++AE V AE A +++HD
Sbjct: 293 KVDPDWKFDVFDDEMVAENGVRSVSAEQARDHMAHD 400
>AV409033
Length = 418
Score = 27.7 bits (60), Expect = 3.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 264 PAYGIKAQKLIIFACCILHNYLMSAEPNEDLIAEVDAELANQNVS-HDNHEASRSDM 319
P+Y KLI C+LHN + A+P D EV A++ Q V+ +D SDM
Sbjct: 177 PSYPNLPSKLI----CMLHNVALHADPETD---EVYAQMTLQPVNKYDKDAILASDM 326
>AV764758
Length = 189
Score = 27.7 bits (60), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 36 PTRWSSVEEQVAKSLYILTHNAKNREVNFW 65
P R + + V KSL+ L+ N KNR+ + W
Sbjct: 58 PVRTN*TAKTVMKSLFKLSRNTKNRDRSMW 147
>TC9482 similar to UP|Q9FI73 (Q9FI73) Mitochondrial carrier protein-like
(At5g48970), partial (42%)
Length = 529
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Frame = +3
Query: 215 YHLKEFSARNPPLNYKE-LFNLRHASLRNAIERAFGVLKKRFEILSNSTEPAYGIKAQK 272
Y SA N P +++ L L + + V+KKRF+I P YG + ++
Sbjct: 126 YRYSNTSAENSPSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVER 302
>TC17322 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
{Arabidopsis thaliana;}, partial (15%)
Length = 584
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
Frame = +3
Query: 251 LKKRFEILSNSTEPAYGIKAQKL--IIFACCILHN 283
LK R+ L TE +K Q L ++ ACC+LHN
Sbjct: 6 LKGRWSCLQKRTE----VKLQDLPIVLGACCVLHN 98
>BP040759
Length = 482
Score = 26.2 bits (56), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 275 IFACCILHNYLMSA-EPNEDLIAEVD 299
I ACC+LHN A EP +L E D
Sbjct: 442 IVACCVLHNLCQIAREPEPELWKEPD 365
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,596,124
Number of Sequences: 28460
Number of extensions: 68897
Number of successful extensions: 299
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146752.6