TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146752.5 + phase: 2 /pseudo/partial
         (273 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19827 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-r...    98  2e-21
TC15043 weakly similar to UP|AAR87280 (AAR87280) Expressed prote...    29  0.75
TC19855 similar to UP|Q84Y10 (Q84Y10) Carbonic anhydrase 2  , pa...    28  1.7
TC14322 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase ...    26  6.4
TC7852 similar to UP|Q9ZP07 (Q9ZP07) Ribulose 1,5-bisphosphate c...    26  6.4

>TC19827 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-related
           membrane protein 1 {Arabidopsis thaliana;} , partial
           (37%)
          Length = 625

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 51/64 (79%), Positives = 52/64 (80%)
 Frame = +2

Query: 1   QNGTIIYFLDWLMWKQIFLL*RHINTPHLQV*CYLTAGLFHASCCLHGFS*KQNIDSRR* 60
           QNGT I FLDW MWKQIFLL*+ INTPH QV*C LTAG FH SC LHGFS*KQNIDS R 
Sbjct: 434 QNGTTI*FLDWSMWKQIFLL*KRINTPH*QV*CCLTAGPFHVSCFLHGFS*KQNIDS*RL 613

Query: 61  LV*L 64
           L *L
Sbjct: 614 LA*L 625


>TC15043 weakly similar to UP|AAR87280 (AAR87280) Expressed protein (With
            alternative splicing), partial (10%)
          Length = 1269

 Score = 29.3 bits (64), Expect = 0.75
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +2

Query: 194  WGICLSSMVLLC*ICLF*PQTCGLS*FASSLTMRR---LIGCTTWR---LVLLSSALLS- 246
            WG  + S VL    C F      +S*        +    +GCT++    L+LL   LLS 
Sbjct: 1010 WGTLILSCVLCYV*CYFYGVLLCVS*LGYVFVKSKDDIFVGCTSYSMWLLLLLLPLLLSF 1189

Query: 247  TLCTY-CCTFIS*TSCSVWSLFFWYF 271
            +LC+Y  CT + * S  V++ +F YF
Sbjct: 1190 SLCSYLACTHLL*ES-DVFNFYFSYF 1264


>TC19855 similar to UP|Q84Y10 (Q84Y10) Carbonic anhydrase 2  , partial (27%)
          Length = 642

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 33  CYLTAGLFHASCCLHGFS 50
           C LTAGL  A C LH FS
Sbjct: 421 CSLTAGLILAECLLHSFS 368



 Score = 26.2 bits (56), Expect = 6.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 237 LVLLSSALLSTLCTYCCTFI 256
           LVL    L+S LCT CC FI
Sbjct: 434 LVLFWIILISMLCTQCC*FI 493


>TC14322 similar to UP|VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C
           (V-ATPase C subunit) (Vacuolar proton pump C subunit) ,
           partial (34%)
          Length = 753

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 235 WRLVLLSSALLSTLCTYCCTFIS*TSCSVWS 265
           WR + L  ALL      CCTFI *    +WS
Sbjct: 121 WRGIHLLDALL------CCTFIC*EHFEIWS 195


>TC7852 similar to UP|Q9ZP07 (Q9ZP07) Ribulose 1,5-bisphosphate carboxylase
           small subunit precursor  , partial (98%)
          Length = 847

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +1

Query: 241 SSALLSTLCTYCCTFIS*TSCSVWSLFFWYF 271
           +S LLS   TY   F++  S  V+S FF++F
Sbjct: 556 TSRLLSLKSTYKKAFVASPSSHVFSFFFFFF 648


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.374    0.167    0.659 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,165,176
Number of Sequences: 28460
Number of extensions: 102737
Number of successful extensions: 2457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 1960
length of query: 273
length of database: 4,897,600
effective HSP length: 89
effective length of query: 184
effective length of database: 2,364,660
effective search space: 435097440
effective search space used: 435097440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 54 (25.4 bits)