BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.15 + phase: 0 /pseudo
(178 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP081812 28 0.91
TC14050 homologue to UP|EF1A_TOBAC (P43643) Elongation factor 1-... 28 0.91
BP048251 28 1.2
TC8435 27 2.6
BP072294 26 3.4
AV771813 26 3.4
TC8238 26 3.4
AV765282 26 3.4
TC9222 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (... 26 3.4
BI419840 26 3.4
BP053549 26 4.5
TC9338 similar to UP|Q9FZF0 (Q9FZF0) T2E6.19, partial (29%) 26 4.5
BP084855 26 4.5
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 26 4.5
TC12297 similar to GB|AAM19913.1|20453349|AY097397 AT3g57090/F24... 25 5.9
BP057356 25 5.9
AV780702 25 7.7
TC11565 homologue to UP|RL1X_ARATH (P51418) 60S ribosomal protei... 25 7.7
BP030268 25 7.7
BP050011 25 7.7
>BP081812
Length = 363
Score = 28.1 bits (61), Expect = 0.91
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 128 TCYWTLSLIVREESEMVLVYKNLRPPVKMLVHVWKAL 164
TC+WTLS + + M + L PV +++ +++L
Sbjct: 268 TCFWTLSALPLRQCSMTFILFALW*PVLLIIFCYRSL 158
>TC14050 homologue to UP|EF1A_TOBAC (P43643) Elongation factor 1-alpha
(EF-1-alpha) (Vitronectin-like adhesion protein 1)
(PVN1), partial (38%)
Length = 583
Score = 28.1 bits (61), Expect = 0.91
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 129 CYWTLSLIVREESEMVLVYKNLRPP 153
C +L L V+EES+++L +LRPP
Sbjct: 246 CLTSLRLSVKEESQLILPCGSLRPP 320
>BP048251
Length = 358
Score = 27.7 bits (60), Expect = 1.2
Identities = 8/31 (25%), Positives = 21/31 (66%)
Frame = -2
Query: 121 LECVTPVTCYWTLSLIVREESEMVLVYKNLR 151
L C+ P C+W +SL+ + + ++ ++ ++L+
Sbjct: 192 LSCLVPSICFWPVSLVPKPKWDIKII*RDLK 100
>TC8435
Length = 732
Score = 26.6 bits (57), Expect = 2.6
Identities = 8/35 (22%), Positives = 24/35 (67%)
Frame = +3
Query: 34 FFVYASALIVLACGIYLYLLEEKSISLVYYSLLFD 68
++ + L++L+C ++ ++E++ + +Y S+L+D
Sbjct: 627 YYTNSVFLLILSCILHK*MMEKEILDFIYISILYD 731
>BP072294
Length = 472
Score = 26.2 bits (56), Expect = 3.4
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 32 KYFFVYASALIVLACGIYLYLLE----EKSISLVYYSLLFDIFLVKLLLRLPVIKVLKLI 87
K F ++ ++ +YL+LL + + L+YY L + K ++ + V++V K +
Sbjct: 273 KMFSIFFFCFLIFIVCVYLFLLSFPVSKHCLLLLYYPL*LKVSFEKWVIVIEVLRVNKKM 94
Query: 88 L 88
L
Sbjct: 93 L 91
>AV771813
Length = 496
Score = 26.2 bits (56), Expect = 3.4
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Frame = -2
Query: 46 CGIYLYLLEEKSISLVYY-----SLLFDIFLVKLLLRLPVI----KVLKLILVILTKLSF 96
C + + + +KS+S VY + + F + LL+ +P+ + L L+ V + L F
Sbjct: 417 CRVIMPVTLKKSLSTVYNRQRQAKIHQEKFWILLLVLMPLT*NRTEHLFLLSVS*SMLGF 238
Query: 97 SCRVCC---DYASFW 108
CR CC +Y +F+
Sbjct: 237 LCRYCCYNDEYFTFY 193
>TC8238
Length = 506
Score = 26.2 bits (56), Expect = 3.4
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Frame = -1
Query: 105 ASFWSTA*DSLYEPVLLECVTPVTCYWTLSLI-VREESEMVLVYKNLRPPVK 155
++F ST L+ P+ L TC+ TLS++ V E LV N P K
Sbjct: 383 SAFTSTFSTLLHSPLALSKTPSATCWLTLSIVAVISEENKYLVTTNEPVPSK 228
>AV765282
Length = 530
Score = 26.2 bits (56), Expect = 3.4
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 46 CGIYLYLLEEKSISLVYYSLLFDI--FLVKLLLR 77
CG +L K ISL+Y SL F + FLV +LR
Sbjct: 206 CGCIKFLFSNKDISLLYKSLGFWLGRFLVVRVLR 105
>TC9222 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (12%)
Length = 564
Score = 26.2 bits (56), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 37 YASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKLLL 76
+ L+V C + YLL KS+ ++ L +I +VKL+L
Sbjct: 409 WKGCLLVPHCKYFWYLLFFKSML*THFILELEIHIVKLIL 528
>BI419840
Length = 484
Score = 26.2 bits (56), Expect = 3.4
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +1
Query: 33 YFFVYASALIVLACGIYLYLLEEKSISLVY 62
Y ++Y +L VL + ++L+E K LVY
Sbjct: 394 YVYIYIYSLCVLT*SVRIFLMEIKCYELVY 483
>BP053549
Length = 546
Score = 25.8 bits (55), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 65 LLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVCCDY 104
LLF L+ + + + +K+ +I+VIL F V DY
Sbjct: 182 LLFHYHLLSIAMEMKTVKMRIMIVVILISTVFDMTVRYDY 63
>TC9338 similar to UP|Q9FZF0 (Q9FZF0) T2E6.19, partial (29%)
Length = 645
Score = 25.8 bits (55), Expect = 4.5
Identities = 14/62 (22%), Positives = 28/62 (44%), Gaps = 3/62 (4%)
Frame = +2
Query: 80 VIKVLKLILVILTKLSFSCRVCCDYASFWSTA*DSLYEPVLLECVTP---VTCYWTLSLI 136
++ L+L+L + K C + C ++ +S P L+EC V+ W + L
Sbjct: 368 MVVFLRLLLSVFCK*ILGCHITCSLSNTFSVVLGC*VYPFLIECGATFAFVSLIWLIVLS 547
Query: 137 VR 138
++
Sbjct: 548 IK 553
>BP084855
Length = 373
Score = 25.8 bits (55), Expect = 4.5
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +1
Query: 15 PSEDVDIHHIVLRSNGGKYFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKL 74
P +D++ I + + V ++VLACG + +L I LV +F +F +
Sbjct: 76 PKTKLDLNKIKQQIKSSQVLIV---GVVVLACGSFWVILPFIPI-LVLAMTIFALFFLIF 243
Query: 75 LLRLPVIKVLKLILVILTKLS 95
R+ + K + + ++I L+
Sbjct: 244 TFRIELRKEVNINIIIADNLT 306
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein,
partial (75%)
Length = 1708
Score = 25.8 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -2
Query: 47 GIYLYLLEEKSISLVYYSLLFD 68
G++LYL+EEK LV + F+
Sbjct: 87 GLFLYLIEEKGTGLVSMAFFFN 22
>TC12297 similar to GB|AAM19913.1|20453349|AY097397 AT3g57090/F24I3_170
{Arabidopsis thaliana;}, partial (79%)
Length = 569
Score = 25.4 bits (54), Expect = 5.9
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Frame = +2
Query: 56 KSISLVYYSLLFDIFLVKLL-LRLPVIKVLKLILVILTKLS 95
KS+S VY+ LLF + +K+ + LP +K L LV +T+ S
Sbjct: 224 KSVSCVYHGLLFTLNDLKMCNVGLPCLK--DLYLVQMTRFS 340
>BP057356
Length = 514
Score = 25.4 bits (54), Expect = 5.9
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -3
Query: 31 GKYFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKLL 75
GK+FF+ L+ L C + + +L+ +S + + LL+ F K+L
Sbjct: 275 GKHFFIPCWDLVGLLCVLIIDMLKRESYMISVF-LLYGYFKSKVL 144
>AV780702
Length = 417
Score = 25.0 bits (53), Expect = 7.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 39 SALIVLACGIYLYLLEEKSISLVYYSLLF 67
S+L++L CG+Y Y L + +++ L+
Sbjct: 220 SSLLLLDCGVYCYCLLYHTFFFLFFIFLY 134
>TC11565 homologue to UP|RL1X_ARATH (P51418) 60S ribosomal protein L18a-1,
complete
Length = 647
Score = 25.0 bits (53), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +2
Query: 145 LVYKNLRPPVKMLVHVWKA 163
LVYK +RPP + L +KA
Sbjct: 494 LVYKKIRPPTRKLKTTYKA 550
>BP030268
Length = 481
Score = 25.0 bits (53), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 101 CCDYASFWSTA*DSLYEPVLLECVTPVTCYWTLSL 135
CC + +WST S +P + C P+T W+ L
Sbjct: 394 CCSHPCYWST---SFNQP--MGCHRPITPPWSFLL 305
>BP050011
Length = 488
Score = 25.0 bits (53), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 35 FVYASALIVLACGIYLYLLEEKSISLVYYSLLFDI 69
F + + V AC IY YLL K I+ V Y + I
Sbjct: 146 FFWWVTIEV*ACNIYSYLLHHKPIA*VCYLFMSTI 42
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.144 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,901,314
Number of Sequences: 28460
Number of extensions: 60621
Number of successful extensions: 515
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of query: 178
length of database: 4,897,600
effective HSP length: 84
effective length of query: 94
effective length of database: 2,506,960
effective search space: 235654240
effective search space used: 235654240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146752.15