TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146751.7 + phase: 0 
         (71 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065030                                                               25  3.6
TC14542                                                                24  6.2
TC13280 weakly similar to GB|AAP68292.1|31711872|BT008853 At5g11...    24  6.2
TC14720 UP|Q9FSH3 (Q9FSH3) Ammonium transporter (AMT1.1), complete     23  8.1
TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a hom...    23  8.1
AV778595                                                               23  8.1

>BP065030 
          Length = 360

 Score = 24.6 bits (52), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 44 DFAVVFFNFLIIYKYCRIYW 63
          D+ ++ F  + IY YC +YW
Sbjct: 88 DYVIILF--ICIYLYCYLYW 35


>TC14542 
          Length = 837

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +1

Query: 48  VFFNFLIIYKYCRI--YWS 64
           VF+  L+++K C++  YWS
Sbjct: 682 VFYELLVLHKLCQVRSYWS 738


>TC13280 weakly similar to GB|AAP68292.1|31711872|BT008853 At5g11730
           {Arabidopsis thaliana;}, partial (39%)
          Length = 702

 Score = 23.9 bits (50), Expect = 6.2
 Identities = 9/26 (34%), Positives = 13/26 (49%)
 Frame = +3

Query: 33  DRQEQMYALLEDFAVVFFNFLIIYKY 58
           D   Q + L+ +  +  FNF  IY Y
Sbjct: 501 DFSNQRFVLISESCIPLFNFSTIYSY 578


>TC14720 UP|Q9FSH3 (Q9FSH3) Ammonium transporter (AMT1.1), complete
          Length = 1774

 Score = 23.5 bits (49), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 45   FAVVFFNFLIIYKYCRIYWS 64
            F  +FF    +Y +C +YWS
Sbjct: 1639 FFFLFFCSSSLYGHCNLYWS 1698


>TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a homolog -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1191

 Score = 23.5 bits (49), Expect = 8.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  APTITHLPGITEEGGDRQEQ 37
           A  ++HLP +TE+G   +++
Sbjct: 93  AAAVSHLPQLTEDGNPNEQE 152


>AV778595 
          Length = 594

 Score = 23.5 bits (49), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (58%)
 Frame = -3

Query: 16  REAPTITHLPGITEEGGDRQEQ 37
           +E PTI H+P +   G D  ++
Sbjct: 562 KETPTILHIPVVALSGNDASKR 497


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,201,358
Number of Sequences: 28460
Number of extensions: 10928
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of query: 71
length of database: 4,897,600
effective HSP length: 47
effective length of query: 24
effective length of database: 3,559,980
effective search space: 85439520
effective search space used: 85439520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)