TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146751.3 + phase: 1 /pseudo
         (439 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17786 similar to PIR|T46177|T46177 villin 3 homolog T8H10.10 -...    29  1.8
TC16499 similar to UP|Q7X9J7 (Q7X9J7) P60 katanin (Fragment), pa...    28  3.0
TC11572 weakly similar to UP|Q8L6I7 (Q8L6I7) Protein phosphatase...    28  3.9
BP050361                                                               27  8.7
TC18185                                                                27  8.7

>TC17786 similar to PIR|T46177|T46177 villin 3 homolog T8H10.10 -
          Arabidopsis thaliana (fragment) {Arabidopsis
          thaliana;}, partial (42%)
          Length = 1228

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 26 EEVEYYCCNWAYCC 39
          E+ E YCC W +CC
Sbjct: 94 EKSENYCCEWCWCC 53


>TC16499 similar to UP|Q7X9J7 (Q7X9J7) P60 katanin (Fragment), partial (61%)
          Length = 646

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 226 HSLWCCRSFQFCVSNNGVYLGFVYSHYIRVWWS 258
           H LW CR      S++G +L      ++RV WS
Sbjct: 372 HRLWKCRELLAMFSSSGKWLRRTERQFLRVIWS 274


>TC11572 weakly similar to UP|Q8L6I7 (Q8L6I7) Protein phosphatase 2A B'kappa
           subunit, partial (19%)
          Length = 662

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 11/23 (47%), Positives = 12/23 (51%), Gaps = 5/23 (21%)
 Frame = +3

Query: 23  KGGEEVEYYCC-----NWAYCCY 40
           KGG E    CC     NW YCC+
Sbjct: 330 KGGMETS*ACCKSQACNWKYCCF 398


>BP050361 
          Length = 445

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 7/19 (36%), Positives = 13/19 (67%)
 Frame = -2

Query: 29  EYYCCNWAYCCYDCRIFDW 47
           +++  N +YCC +C +F W
Sbjct: 327 DWWLRNGSYCCSECLVFRW 271


>TC18185 
          Length = 667

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 7/19 (36%), Positives = 13/19 (67%)
 Frame = +2

Query: 29  EYYCCNWAYCCYDCRIFDW 47
           +++  N +YCC +C +F W
Sbjct: 185 DWWLRNGSYCCSECLVFRW 241


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.166    0.734 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,743,306
Number of Sequences: 28460
Number of extensions: 175152
Number of successful extensions: 2829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 2303
length of query: 439
length of database: 4,897,600
effective HSP length: 93
effective length of query: 346
effective length of database: 2,250,820
effective search space: 778783720
effective search space used: 778783720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 57 (26.6 bits)