TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146751.11 - phase: 0 
         (399 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14805 similar to UP|RP3A_ARATH (Q39211) DNA-directed RNA polym...   140  4e-34
BP028509                                                               29  1.2
TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, ...    28  2.1
TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-lik...    28  2.7
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec...    28  3.5
TC15795 weakly similar to UP|Q8H1T9 (Q8H1T9) Phospholipase D del...    28  3.5
BP049099                                                               27  4.6
TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5,...    27  6.0
TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-...    27  7.8
CB827026                                                               27  7.8
BP064473                                                               27  7.8
TC8341 similar to UP|Q94FX1 (Q94FX1) Heme oxygenase 1 (Fragment)...    27  7.8

>TC14805 similar to UP|RP3A_ARATH (Q39211) DNA-directed RNA polymerase II 36
           kDa polypeptide A  (RNA polymerase II subunit 3) ,
           complete
          Length = 1273

 Score =  140 bits (353), Expect = 4e-34
 Identities = 104/317 (32%), Positives = 161/317 (49%), Gaps = 9/317 (2%)
 Frame = +2

Query: 87  KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
           +V+++ + D+   F++   D ++ANA RR++I+EVPT+AI+ V I  N+S++ DE ++HR
Sbjct: 71  RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 250

Query: 147 LGLIPIDADPKL---FEYPDDA--GGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLP 201
           LGLIP+ ++  +   F    DA  G    E  ++ F   V+C   +  L V S  L    
Sbjct: 251 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE-TLDVTSKDL---- 415

Query: 202 NGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHA 261
                 ++ T    D +P T            S D A  N  +I+ KL  GQE+ L A A
Sbjct: 416 ----YSSDHTVVPVDFSPDT------------SSDSA-VNKGIIIVKLRRGQELRLRAIA 544

Query: 262 VKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELA----EELVSKCPAKVFDIEDIGRG 317
            KGIGK HAKWSP AT  +   P++ +  D+ + L     +E V  CP  VFDI+     
Sbjct: 545 RKGIGKDHAKWSPAATVSFMYKPQIHINDDLMETLTLKEKKEWVESCPTHVFDID---AN 715

Query: 318 RKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPD 377
            +K  V  A   +   E I++A+   + G        V +   +D FIF +E+TGA+   
Sbjct: 716 TQKVYVHEAENYSYDDEVIKKAEAMGKPG-------LVEITAKQDSFIFIVETTGAVKAS 874

Query: 378 VLFTEAVKILEDKCERV 394
            L   A++IL+ K + V
Sbjct: 875 QLVLNAIEILKQKLDAV 925


>BP028509 
          Length = 551

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 22/67 (32%), Positives = 29/67 (42%), Gaps = 10/67 (14%)
 Frame = -3

Query: 108 AVANAFRRILIAEVPTMAIERV--------YIANNTSLVQDEVLSH--RLGLIPIDADPK 157
           A  NA+ RIL  + PT  I  V           NN  L  +E  +   RL L+P+ +   
Sbjct: 339 AAMNAYTRILARKYPTFCINSVCXGYCKTDITVNNGFLTAEEGAASPVRLALLPLGSPSG 160

Query: 158 LFEYPDD 164
           LF Y  D
Sbjct: 159 LFYYKGD 139


>TC8617 similar to UP|Q9SSZ4 (Q9SSZ4) Asparaginyl endopeptidase, partial
           (44%)
          Length = 904

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 22  RGIPDYIMNLED--VPSTLPTHLELQKTRVFCNLDAPQHT 59
           RG+P    NL    +P+ LP HL+    R  C+L+   HT
Sbjct: 813 RGLPHQRYNLHSSHMPNYLPLHLQQWLHRCLCHLEEVLHT 694


>TC11813 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-like protein,
           partial (36%)
          Length = 917

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 LTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTF-NQKSLPKFSKDPAPYNLDVIVAK 248
           L  K   L +  NG EL +E  +   DPA +    F + ++LPK SKD    N+ VIV  
Sbjct: 355 LARKRILLWYKKNGFELSSERGEGV-DPAAQAAAEFLSNRALPKGSKD----NITVIVVD 519

Query: 249 LGP 251
           L P
Sbjct: 520 LKP 528


>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
           partial (51%)
          Length = 1566

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 23/67 (34%), Positives = 27/67 (39%)
 Frame = +2

Query: 310 DIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIE 369
           D E IGRG+KK   KN            +   GE  GEGE     + LR+      FT  
Sbjct: 725 DEESIGRGKKKRKKKNHAG---------QFHLGERAGEGEDAELAMVLRKTSAP*RFTRT 877

Query: 370 STGAIPP 376
           ST    P
Sbjct: 878 STALHAP 898


>TC15795 weakly similar to UP|Q8H1T9 (Q8H1T9) Phospholipase D delta isoform
           1a  , partial (9%)
          Length = 593

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +1

Query: 128 RVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPD-----DAGG 167
           R Y + + SL+Q  +L +    +P+D+D K+   PD     DAGG
Sbjct: 67  RKYASEDFSLLQGHLLKYP---VPVDSDGKISSLPDCENFPDAGG 192


>BP049099 
          Length = 483

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 216 DPAPKTFTTFNQKSLPKFSKDPAPY 240
           D APK F  FN    PK+ +DP  Y
Sbjct: 166 DKAPKKFYLFNSYFSPKYLEDPLYY 92


>TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5, TAC
           clone:K19M13, partial (48%)
          Length = 1127

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +3

Query: 182 RCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYN 241
           R +KG   LT   DT KW    +    + + + +DP P         + PK+  +P  ++
Sbjct: 774 RNDKGWTGLTTTHDTSKWGNTTTNDREDISSTLSDPGP------IWDAEPKWDAEPTNWD 935

Query: 242 LDVIVAKLGPGQEIEL 257
           ++  +   GP  + E+
Sbjct: 936 VENPIELPGPSDDAEV 983


>TC14478 weakly similar to UP|Q94G86 (Q94G86) Beta-1,3-glucanase-like
           protein, partial (83%)
          Length = 1784

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 213 SAADPAPKTFTTFNQKSLPKFSKDPAP 239
           S+A    K+ TTF+++S P  S DP P
Sbjct: 143 SSASTTAKSPTTFHRQSPPSTSSDPPP 223


>CB827026 
          Length = 542

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 78  RLDNFYQNFKVEVKRITDEEM 98
           +LDNFYQN +  VK   DE++
Sbjct: 465 QLDNFYQNHRRYVKSRNDEQL 527


>BP064473 
          Length = 471

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 337 READEGEEGGEGEKWTDRVSLRRVKD 362
           RE  + EEGG GEK   +   RR KD
Sbjct: 468 RERSDDEEGGTGEKKKRKGGKRRKKD 391


>TC8341 similar to UP|Q94FX1 (Q94FX1) Heme oxygenase 1 (Fragment),
          partial (86%)
          Length = 1286

 Score = 26.6 bits (57), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
 Frame = +1

Query: 34 VPSTLPTHLELQKTRVFC-----------NLDAPQHTDTI 62
          +PS L +HL+  KT +             N   PQHTDT+
Sbjct: 22 IPSILHSHLQRNKTPIIITNLTKKTPIALNKPLPQHTDTV 141


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,004,801
Number of Sequences: 28460
Number of extensions: 76819
Number of successful extensions: 418
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of query: 399
length of database: 4,897,600
effective HSP length: 92
effective length of query: 307
effective length of database: 2,279,280
effective search space: 699738960
effective search space used: 699738960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)