TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146749.13 - phase: 0 /pseudo
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036421                                                               58  3e-10
BP069522                                                               24  4.9
TC12979 similar to UP|Q9LQL2 (Q9LQL2) F5D14.23 protein, partial ...    24  4.9
TC15674                                                                24  6.3
TC16500 weakly similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16,...    23  8.3
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d...    23  8.3
TC16117 homologue to UP|O80673 (O80673) CPDK-related protein (Ca...    23  8.3

>BP036421 
          Length = 436

 Score = 58.2 bits (139), Expect = 3e-10
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +2

Query: 4   QPSERDFKGEASSDKSKSTLERTKEETGWPSFRQVV-DLLKLSLEEFTSSILKFM 57
           QPSE++FK +ASS+K K   E  KEE GWPSFRQ+V DL KLS++   SS  +F+
Sbjct: 239 QPSEKEFKDQASSEKPK---ESHKEEPGWPSFRQLVADLSKLSIDALNSSFFQFI 394


>BP069522 
          Length = 429

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -3

Query: 3   QQPSERDFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEEFTSSI 53
           ++P+    +G+  S  ++    R+++ +G     + VDL+  SLEEF S++
Sbjct: 295 KEPAHLKRRGDLISKPAEKP-NRSEQGSGKVEEEEEVDLISKSLEEFGSAM 146


>TC12979 similar to UP|Q9LQL2 (Q9LQL2) F5D14.23 protein, partial (25%)
          Length = 601

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 10/22 (45%), Positives = 17/22 (76%)
 Frame = +1

Query: 46  LEEFTSSILKFMSNLIALGEAS 67
           L +FTSS+L  +S++I +GE +
Sbjct: 367 LAQFTSSLLWVLSSVILIGEGT 432


>TC15674 
          Length = 648

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +1

Query: 6   SERDFKGEASSDKSKSTLERTKEETGWPSFRQ 37
           S+  F    +S K+   +E+T     WPSFR+
Sbjct: 163 SKSSFCPNNNSGKNTGIMEQTIVYLNWPSFRK 258


>TC16500 weakly similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16, partial
          (6%)
          Length = 559

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 8  RDFKGEASSDKSKSTLERTKEETGWPS 34
          R  + E + DKS   L+RTK+ + +P+
Sbjct: 13 RHVQPEVNMDKSYEALKRTKKTSDFPA 93


>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
            partial (97%)
          Length = 2266

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 21   STLERTKEETGWPSFRQVVDLLKLSLE 47
            S +ERTK++   P  +QV+D +  S +
Sbjct: 2121 SFIERTKDKLKRPKCKQVIDAVPTSTQ 2041


>TC16117 homologue to UP|O80673 (O80673) CPDK-related protein
           (Calcium/calmodulin-dependent protein kinase CaMK3) ,
           partial (6%)
          Length = 631

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 29  ETGWPSFRQVVDLLKLSLEE 48
           ETGW    Q V+LLK +L +
Sbjct: 348 ETGWRKCLQFVELLKRALND 289


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.126    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 783,404
Number of Sequences: 28460
Number of extensions: 5715
Number of successful extensions: 35
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)