TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146743.7 + phase: 0 
         (376 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16249 similar to UP|O63067 (O63067) Aspartokinase-homoserine d...    72  2e-13
TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine ...    61  3e-10
BP056396                                                               39  0.002
TC9530 similar to UP|BAD10144 (BAD10144) CAAX amino terminal pro...    27  4.2
TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvat...    27  7.2
BP064446                                                               26  9.5
BI420177                                                               26  9.5

>TC16249 similar to UP|O63067 (O63067) Aspartokinase-homoserine
           dehydrogenase  (HDH) (Aspartate kinase) , partial (13%)
          Length = 590

 Score = 72.0 bits (175), Expect = 2e-13
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
 Frame = +3

Query: 285 DKDIQERVEKAASNGNVLRYVCVIEGPRCEVGIQEL---PKNSALGRLRGSDNVLEVYTR 341
           DK++ ++ E A S G VLRYV V++  R E G+ EL    K+    +L GSDN++   TR
Sbjct: 57  DKELTKKQEDAESAGEVLRYVGVVD-VRNEKGVVELRRYKKDHPFAQLSGSDNIIAFTTR 233

Query: 342 CYSNQPLVIQGAGAGNDTTAAGVLADIV 369
            Y NQPL+++G GAG   TA G+ +DI+
Sbjct: 234 RYQNQPLIVRGPGAGAQVTAGGIFSDIL 317


>TC9572 homologue to UP|O63067 (O63067) Aspartokinase-homoserine
           dehydrogenase  (HDH) (Aspartate kinase) , partial (11%)
          Length = 510

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 32/87 (36%), Positives = 51/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 285 DKDIQERVEKAASNGNVLRYVCVIE--GPRCEVGIQELPKNSALGRLRGSDNVLEVYTRC 342
           D+   + +E+A   G VLRYV V++    +  V ++   K+     L GSDN++   TR 
Sbjct: 4   DQMFAKTLEEAEYAGEVLRYVGVVDVTSKKGVVELRRYKKDHPFAPLSGSDNIIAFTTRR 183

Query: 343 YSNQPLVIQGAGAGNDTTAAGVLADIV 369
           Y +QPL+++G GAG   TA G+ +DI+
Sbjct: 184 YKDQPLIVRGPGAGAQVTAGGIFSDIL 264


>BP056396 
          Length = 368

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 312 RCEVGIQEL---PKNSALGRLRGSDNVLEVYTRCYSNQPLVIQGAGAGNDTTA 361
           R E G+ EL    K+     L GSD ++   TR Y N PL+++G GAG   T+
Sbjct: 361 RNEKGVVELRRYQKDHPFAPLSGSDKIIAFPTRRYQNPPLIVRGPGAGAPVTS 203


>TC9530 similar to UP|BAD10144 (BAD10144) CAAX amino terminal protease
           family-like protein, partial (32%)
          Length = 626

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 7   ILMGCGGVGSHLLQHIVSSRSLHSSQGL 34
           ++M   GVG+HL++ ++ S  + S QG+
Sbjct: 195 LMMIATGVGTHLVREVIKSLEIQSPQGV 112


>TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvate
           kinase-like protein), partial (81%)
          Length = 1430

 Score = 26.6 bits (57), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 69  LKHGGESLSKLGDLGQCQVFVHPES 93
           ++   E LSKLGDL Q Q+F   E+
Sbjct: 845 VRQAREFLSKLGDLSQTQIFAKIEN 919


>BP064446 
          Length = 392

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -2

Query: 339 YTRCYSNQPLVIQGAGAGNDTTAA-----GVLADIVDIQDL 374
           +TR   N P +IQ A AGND         GVLA ++ +Q L
Sbjct: 313 FTRYSVNGPKMIQSAFAGNDRMTGSLINLGVLAFLMVLQPL 191


>BI420177 
          Length = 444

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 21/95 (22%), Positives = 37/95 (38%)
 Frame = +3

Query: 143 LTSTMGDFEKLLTYPRRIRHESTVGAGLPVISSLNRIISSGDPVNRIIGSLSGTLGYVMS 202
           L+ T+   + LL   +    E       P  ++ +     GD     +G+ +  +   + 
Sbjct: 3   LSVTLASMDSLLATYKDEEEEEDEEEAPPTTTTTSTAADGGDGGGVAVGADTEPIPIDVP 182

Query: 203 EVEDGKPLSQVVRAAKSLGYTEPDPRDDLGGMDVA 237
            V    P S      ++ G +EPDP DDL   + A
Sbjct: 183 PVVTSTP-SDTQTEPQNDGRSEPDPSDDLSSEEAA 284


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,862,176
Number of Sequences: 28460
Number of extensions: 75207
Number of successful extensions: 308
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of query: 376
length of database: 4,897,600
effective HSP length: 92
effective length of query: 284
effective length of database: 2,279,280
effective search space: 647315520
effective search space used: 647315520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)