BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146743.5 + phase: 0
(377 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP042568 28 1.9
BP035824 28 2.5
TC17494 weakly similar to UP|Q940M0 (Q940M0) At1g63980/F22C12_9,... 28 2.5
TC7861 similar to UP|AAR86686 (AAR86686) Proline dehydrogenase ... 28 2.5
TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp prot... 28 3.3
TC15216 similar to UP|O64851 (O64851) At2g26190 protein (At2g261... 28 3.3
TC7863 similar to UP|AAR86686 (AAR86686) Proline dehydrogenase ... 27 5.6
BP055029 27 7.3
TC12314 26 9.5
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 26 9.5
>BP042568
Length = 575
Score = 28.5 bits (62), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 124 DVAFHYFKVHFLQSILPNETNNKNFTINYFHEHY 157
+++ HY KVH ++I P ETN+ ++ +HY
Sbjct: 35 NLSLHYLKVH*KRNINPYETNHS*VQLSTIIKHY 136
>BP035824
Length = 503
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 8 YLKSFFLERTHKGLGDCIGYIKKSEEIIRSC 38
Y + F + KG G C+G K+S ++R C
Sbjct: 466 YYQWLFHTKKDKGFGQCLGNRKRS*NLVREC 374
>TC17494 weakly similar to UP|Q940M0 (Q940M0) At1g63980/F22C12_9, partial
(18%)
Length = 634
Score = 28.1 bits (61), Expect = 2.5
Identities = 20/91 (21%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Frame = -2
Query: 270 LDFLIDTSQDVDKLVEKGIMINTLGDSNAVAKMINNLCLNVVQENINGGYISLCRKLNCF 329
+ L+D ++ + ++ ++ ++ +A + +V E S R L+CF
Sbjct: 363 IQLLVDANRTLFPSIQNFLLPDSFCFK*VIASLFEEKSDKIVDER------SSIRTLSCF 202
Query: 330 -YEDPSHKYKAIFIHDYFSTPWKITSFAAAI 359
+ D S IF+H++FS T+F+ I
Sbjct: 201 SFSDSSGTCCKIFLHNFFSFTLDSTTFSTLI 109
>TC7861 similar to UP|AAR86686 (AAR86686) Proline dehydrogenase , partial
(40%)
Length = 943
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 40 SEAIEQTSDDFVKIILTDAC--FIIEYFLRSLEWPQEDPLLSKPW 82
S ++ +S FV + +T C ++E L W Q+DP + PW
Sbjct: 706 SRSLPPSSVSFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPW 840
>TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp protease
ATP-binding subunit clpA homolog, chloroplast precursor
, partial (33%)
Length = 908
Score = 27.7 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -1
Query: 66 LRSLEWPQEDPLLSKPWLRCDVKLDLIL 93
LRS+ + P SK WLR D LI+
Sbjct: 260 LRSISLSRSSPAFSKSWLRTDSSFSLII 177
>TC15216 similar to UP|O64851 (O64851) At2g26190 protein
(At2g26190/T1D16.17), partial (39%)
Length = 1255
Score = 27.7 bits (60), Expect = 3.3
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +1
Query: 240 HWTETLLRNVVAFEQCHYPFQTYITDYTILLDFLIDTSQDVDKLVEKGIMINTLGDSNAV 299
H TE + ++F + H D T + ID D + T+G S+A+
Sbjct: 379 HPTEENFKEFISFLEEHN------VDLTNVKRCAID--DDTPSFIATNESQQTMGPSSAI 534
Query: 300 AKMINNLCLNVVQENINGGYISLCRKLNC 328
+N+ + + EN +GG +L ++L+C
Sbjct: 535 N--VNDSNMVTIHENDDGGVFNLSKRLSC 615
>TC7863 similar to UP|AAR86686 (AAR86686) Proline dehydrogenase , partial
(68%)
Length = 1326
Score = 26.9 bits (58), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 40 SEAIEQTSDDFVKIILTDAC--FIIEYFLRSLEWPQEDPLLSKPW 82
S ++ +S FV + +T C ++E L W Q+DP PW
Sbjct: 64 SRSLPPSSVSFVIVKITAICPMALLERMSDLLRWQQKDPSFILPW 198
>BP055029
Length = 506
Score = 26.6 bits (57), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = -1
Query: 232 TIPRFEVCHWTETLLRNVVAFEQCHYPFQTY 262
+I RF + H T ++RNV + HY + +Y
Sbjct: 341 SIYRFYIAHSTSNIIRNVSFYPCIHY*YVSY 249
>TC12314
Length = 827
Score = 26.2 bits (56), Expect = 9.5
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = -2
Query: 62 IEYFLRSLEWPQEDPLLSKPWLRCDVKL 89
+ YF +S+ W Q + + K W + VKL
Sbjct: 268 VNYFRKSMLWLQTEQTIEKKWYKRVVKL 185
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 26.2 bits (56), Expect = 9.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 328 CFYEDPSHKYKAIFIHDYFSTPWKITSFAAAIV 360
C Y P YK +DY+ TP K+ A ++
Sbjct: 1530 CGYGQPKDCYKYNECNDYYQTPCKLLGIDALLI 1432
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,191,471
Number of Sequences: 28460
Number of extensions: 105706
Number of successful extensions: 748
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of query: 377
length of database: 4,897,600
effective HSP length: 92
effective length of query: 285
effective length of database: 2,279,280
effective search space: 649594800
effective search space used: 649594800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146743.5