TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146743.2 - phase: 0 
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    93  1e-20
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    81  3e-17
BP046665                                                               54  4e-09
BP065488                                                               49  2e-07
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     46  2e-06
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    42  2e-05
TC9013                                                                 33  0.010
TC13891 homologue to UP|Q940Y6 (Q940Y6) AT4g27600/T29A15_90, par...    26  1.7
TC17624                                                                25  2.2
TC13110 similar to GB|CAC05445.1|9955561|ATT19L5 senescence-asso...    24  6.3
AV778595                                                               23  8.3
AV780533                                                               23  8.3

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 43/68 (63%), Positives = 54/68 (79%)
 Frame = +1

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
           MTINKSQGQSL HV +YL  P+F+HGQLYVA+SRV SR GLK+L+ D+++   +   NVV
Sbjct: 244 MTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTKNVV 423

Query: 61  YREVFRNL 68
           YREVF N+
Sbjct: 424 YREVFENI 447


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 81.3 bits (199), Expect = 3e-17
 Identities = 38/68 (55%), Positives = 51/68 (74%)
 Frame = +2

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
           MTINKSQG+SL HVG+YL  P+ +HG LYVA+ RV SR  LK+L+ D+++   +   NVV
Sbjct: 272 MTINKSQGRSLSHVGLYLSRPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVV 451

Query: 61  YREVFRNL 68
           YRE+F N+
Sbjct: 452 YREIFENI 475


>BP046665 
          Length = 524

 Score = 54.3 bits (129), Expect = 4e-09
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = -1

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAI 32
           MTINKSQGQSL HVG+YL   +F+HGQLYVA+
Sbjct: 248 MTINKSQGQSLSHVGLYLSRHVFTHGQLYVAL 153



 Score = 31.6 bits (70), Expect = 0.030
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 17  YLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVVY 61
           Y+   ++SH      +S + SR GLK+L+ D+++   +   NVVY
Sbjct: 202 YIFLAMYSHMVSCTLLSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>BP065488 
          Length = 439

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
 Frame = -1

Query: 1   MTINKSQGQSLEHVGVYLPSPI--FSH-GQLYVAISRVTSRGGLKILINDDDDDNIDVAS 57
           MTINKSQ  S+ +  V L S +  +SH  +LYVA+S V SR GLK+L+  +++   +   
Sbjct: 277 MTINKSQX-SVHYPTVALISFLACYSHMDKLYVALSGVRSRKGLKLLVLGEEEKVTNATK 101

Query: 58  NVVYREVFRNL 68
           N VY+EVF+N+
Sbjct: 100 NEVYQEVFKNI 68


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +2

Query: 28 LYVAISRVTSRGGLKILINDDDDDNIDVASNVVYREVFRNL 68
          LYVA+SRV S+ GLKILI+ D         N+VY+EVF+ +
Sbjct: 2  LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKI 124


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 26/36 (71%)
 Frame = +3

Query: 33  SRVTSRGGLKILINDDDDDNIDVASNVVYREVFRNL 68
           SRV SR GLK+L+ D+++   +   NVVYREVF N+
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476


>TC9013 
          Length = 766

 Score = 33.1 bits (74), Expect = 0.010
 Identities = 16/26 (61%), Positives = 18/26 (68%)
 Frame = +3

Query: 43  ILINDDDDDNIDVASNVVYREVFRNL 68
           ILI D DD N +  SNVVY EVFR +
Sbjct: 627 ILICDGDDSNSNSTSNVVYTEVFRTV 704


>TC13891 homologue to UP|Q940Y6 (Q940Y6) AT4g27600/T29A15_90, partial (7%)
          Length = 441

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +1

Query: 19  PSPIFSHGQLYVAISRVTSRG------GLKILINDDDDDNIDVASNVV 60
           P     HG L+   S  +S G      G +  + DDDDD+ +VA N V
Sbjct: 190 PGSASIHGGLFRVSSSFSSHGCAAFDGGSEGDLEDDDDDDDEVAENGV 333


>TC17624 
          Length = 615

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 10/12 (83%), Positives = 12/12 (99%)
 Frame = +1

Query: 57  SNVVYREVFRNL 68
           SNVVY+EVFRN+
Sbjct: 538 SNVVYKEVFRNV 573


>TC13110 similar to GB|CAC05445.1|9955561|ATT19L5 senescence-associated
           protein (SAG29) {Arabidopsis thaliana;} , partial (21%)
          Length = 605

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 4   NKSQGQSLEHVGVYLPSPIFS 24
           ++   Q + H G  LPSP+FS
Sbjct: 381 SRCSAQEVTHAGRSLPSPLFS 319


>AV778595 
          Length = 594

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 36  TSRGGLKILINDDDDDNIDVASNVV 60
           +S     +L  DDDDD+ D AS++V
Sbjct: 153 SSNSCCSLLPPDDDDDDDDDASSIV 79


>AV780533 
          Length = 530

 Score = 23.5 bits (49), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 12  EHVGVYLPSPIFSHGQLYVAISRVTSRGGLK 42
           EH   +LP P+ + G+  +     +SRG L+
Sbjct: 335 EHATTFLPGPMHTDGRQTLPPDS*SSRGSLR 243


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 895,438
Number of Sequences: 28460
Number of extensions: 8528
Number of successful extensions: 71
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)