BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146723.15 + phase: 0
(345 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP047195 150 3e-37
TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%) 137 3e-33
TC13323 weakly similar to UP|P93103 (P93103) Cyclin-D like prote... 55 2e-08
BP030979 48 2e-06
TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%) 34 0.041
TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate cotran... 30 0.45
BI419972 30 0.59
AV413583 30 0.59
AV771808 27 0.77
TC13107 similar to GB|AAM65362.1|21655301|AY103310 At2g37550/F13... 30 0.78
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 30 0.78
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 30 0.78
TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete 29 1.0
TC17476 similar to UP|Q9SAG9 (Q9SAG9) F23A5.27, partial (44%) 29 1.0
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 29 1.0
CN825561 29 1.3
BP059341 29 1.3
BP053494 28 1.7
TC18022 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycos... 28 1.7
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 28 1.7
>BP047195
Length = 390
Score = 150 bits (379), Expect = 3e-37
Identities = 80/110 (72%), Positives = 88/110 (79%), Gaps = 2/110 (1%)
Frame = -2
Query: 221 IQDASFLTYRPSCIAAAAILSAANEIPNWSFVNPEHAESWCEGLSKEKIIGCYELIQE-I 279
I D SFL YR SCIAAA ILSA+NEIP WSFV PEHAESWC+GL KEKII CY+LIQE I
Sbjct: 389 IHDVSFLAYRSSCIAAAPILSASNEIPEWSFVKPEHAESWCQGLRKEKIIVCYKLIQELI 210
Query: 280 VSSNNQRNAPKVLPQLRVTARTRRWSTVSS-SSSSPSSSSSPSFSLSYKK 328
V +++ PKVLPQLRVT RTRRWS +SS SSSS SSSSS SF LS K+
Sbjct: 209 VINHSSGRTPKVLPQLRVTTRTRRWSCISSLSSSSSSSSSSSSFLLSIKE 60
>TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%)
Length = 816
Score = 137 bits (344), Expect = 3e-33
Identities = 69/161 (42%), Positives = 100/161 (61%)
Frame = +2
Query: 80 ESSTREEAIAWILKVHEYYGFQPLTAYLSVNYMDRFLDSRPLPESNGWPLQLLSVACLSL 139
+ TR E +AWI KV ++GF LT L+V+Y DRF+ S W QL +VACLSL
Sbjct: 326 DGGTRVEGVAWISKVSAHFGFSALTTVLAVSYFDRFITSPRFQRDKPWMTQLSAVACLSL 505
Query: 140 AAKMEEPLVPSLLDFQIEGAKYIFQPRTILRMELLVLTILDWRLRSITPLSFLSFFACKL 199
AAK+EE VP LLD Q+E ++++F+ +TI RMELLVL+ L WR+ +TP+SF +L
Sbjct: 506 AAKVEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIIRRL 685
Query: 200 DSTGTFTHFIISRATEIILSNIQDASFLTYRPSCIAAAAIL 240
+ R ++L+ I D+ ++Y PS +AAAA++
Sbjct: 686 GLKTRLHWEFLWRCERVLLNVIPDSRVMSYLPSTLAAAAMI 808
>TC13323 weakly similar to UP|P93103 (P93103) Cyclin-D like protein, partial
(19%)
Length = 514
Score = 55.1 bits (131), Expect = 2e-08
Identities = 41/131 (31%), Positives = 67/131 (50%), Gaps = 1/131 (0%)
Frame = +1
Query: 203 GTFTHFIISRATEIILSNIQDASFLTYRPSCIAAAAILSAANEIPNWSFVNPEHAESWCE 262
G+ +ISR+T++ILS I+ FL ++PS IAAA + E S + +
Sbjct: 7 GSSLSSLISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVGE--TQSVDTDQTISILIQ 180
Query: 263 GLSKEKIIGCYELIQEIVSS-NNQRNAPKVLPQLRVTARTRRWSTVSSSSSSPSSSSSPS 321
+ KE+++ C E+I E+ S+ ++ +AP V P +S S ++ SS S
Sbjct: 181 HVEKERLMKCVEMIHELSSNKDSSASAPCVPPSPIGVLEAGCFSYKSDVDTNAGSSCSSD 360
Query: 322 FSLSYKKRKLN 332
S S K+RKL+
Sbjct: 361 NSPSAKRRKLH 393
>BP030979
Length = 510
Score = 48.1 bits (113), Expect = 2e-06
Identities = 29/77 (37%), Positives = 42/77 (53%)
Frame = +3
Query: 69 DYVSRFQSRSLESSTREEAIAWILKVHEYYGFQPLTAYLSVNYMDRFLDSRPLPESNGWP 128
DYV + Q R + ++ R + W+++V E Y T Y V+Y+DRFL L
Sbjct: 291 DYVQKVQ-RDVNANMRGVXVDWLVEVSEEYKLVSDTLYFCVSYIDRFLSLNSLSRQK--- 458
Query: 129 LQLLSVACLSLAAKMEE 145
LQLL VA + +A+K EE
Sbjct: 459 LQLLGVASMLVASKYEE 509
>TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%)
Length = 554
Score = 33.9 bits (76), Expect = 0.041
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +1
Query: 171 MELLVLTILDWRLRSITPLSFL-SFFACKLDSTGTFTHFIISRATEIILSNIQDASFLTY 229
ME +L L W L TP FL + + D F ++ E+ L + Q + ++Y
Sbjct: 40 MERSILEKLQWYLTVPTPYVFLVRLSSVQPDKQMENLAFFLA---ELTLEHYQ--AIVSY 204
Query: 230 RPSCIAAAAILSA---ANEIPNWSFVNPEHAESWCEGLSKEKIIGCYELIQEIVSS 282
PS IAA+AI +A N P WS + S+C E+II C +L+ + +S
Sbjct: 205 SPSTIAASAIYAARCTLNRRPFWS-ETLKRLSSYC----TEQIIECAKLLVSLQTS 357
>TC9502 similar to UP|Q8LG88 (Q8LG88) Sodium-dicarboxylate
cotransporter-like, partial (42%)
Length = 1253
Score = 30.4 bits (67), Expect = 0.45
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +1
Query: 246 IPNWSFVNPEHAESWCEGLSKEKIIGCYELIQEIVSSNNQ 285
I +W + NP HA+SWC GC++ I+ +N++
Sbjct: 571 ICHWPY*NPGHAQSWCASK------GCWDSFALILDANSR 672
>BI419972
Length = 498
Score = 30.0 bits (66), Expect = 0.59
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -2
Query: 305 STVSSSSSSPSSSSSPSFSL 324
S+ SSSSSSPSSSSS S SL
Sbjct: 398 SSASSSSSSPSSSSSVSLSL 339
Score = 27.3 bits (59), Expect = 3.8
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -2
Query: 4 SSTSDCELLCGEDSSEVLTGDLPECSSDLDSSSSSQLPSSSLFAEEEEESIAVF 57
SS L G S + PE SS SSSSS SSS + S+++F
Sbjct: 497 SSDPPAPLASGSSSGSASSPSSPE*SSPSSSSSSSASSSSSSPSSSSSVSLSLF 336
>AV413583
Length = 429
Score = 30.0 bits (66), Expect = 0.59
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 305 STVSSSSSSPSSSSSPSFSLSYKK 328
+T SSSSSSPS+ S PS SL K
Sbjct: 166 ATTSSSSSSPSALSDPSISLKSSK 237
>AV771808
Length = 433
Score = 27.3 bits (59), Expect(2) = 0.77
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 271 GCYELIQEIVSSNNQRNAPKVLPQLRVTARTRRWSTVSSSSSSPS---SSSSPSFSLSYK 327
GC ++++ NNQ + P V + AR TVS S+S + SFS SY
Sbjct: 129 GCIRPCDQLIN*NNQHHGPPV----KSGARAGHMETVSLSTSFDKFCCRKPNRSFSKSYS 296
Query: 328 K 328
K
Sbjct: 297 K 299
Score = 20.8 bits (42), Expect(2) = 0.77
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 257 AESWCEGLSKEKIIGC 272
A SW GLSK + I C
Sbjct: 23 AYSWERGLSKHRSIVC 70
>TC13107 similar to GB|AAM65362.1|21655301|AY103310 At2g37550/F13M22.5
{Arabidopsis thaliana;}, partial (29%)
Length = 465
Score = 29.6 bits (65), Expect = 0.78
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +3
Query: 299 ARTRRWSTVSSSSSSPSSSSSPS 321
+R+RRW V++++S+PSS ++PS
Sbjct: 240 SRSRRWRQVATTASTPSSLATPS 308
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 29.6 bits (65), Expect = 0.78
Identities = 19/45 (42%), Positives = 23/45 (50%)
Frame = -2
Query: 281 SSNNQRNAPKVLPQLRVTARTRRWSTVSSSSSSPSSSSSPSFSLS 325
SS+ ++ T R R+S SSSSS SSSSS S S S
Sbjct: 315 SSSGSKSLDASSSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSS 181
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 29.6 bits (65), Expect = 0.78
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -3
Query: 298 TARTRRWSTVSSSSSSPSSSSSPSFSLS 325
+A T S+ SSSSSSPSSSSS S S S
Sbjct: 317 SASTSSSSSSSSSSSSPSSSSSSSSSSS 234
>TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete
Length = 1193
Score = 29.3 bits (64), Expect = 1.0
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +1
Query: 311 SSSPSSSSSPSFSLSYKKRKL 331
SSSPSSSS PS S SY R L
Sbjct: 46 SSSPSSSSPPSGSCSYPNRSL 108
>TC17476 similar to UP|Q9SAG9 (Q9SAG9) F23A5.27, partial (44%)
Length = 804
Score = 29.3 bits (64), Expect = 1.0
Identities = 19/49 (38%), Positives = 26/49 (52%)
Frame = +2
Query: 285 QRNAPKVLPQLRVTARTRRWSTVSSSSSSPSSSSSPSFSLSYKKRKLNS 333
Q N PK + A T+ +++ S SSSP SPS SLS K++S
Sbjct: 149 QTNRPKFAYSI*GEANTKVRNSIRSCSSSPRVCLSPSNSLSLVSVKVSS 295
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 29.3 bits (64), Expect = 1.0
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 6/32 (18%)
Frame = +2
Query: 298 TARTRRWSTVSSSSS------SPSSSSSPSFS 323
++ T WS+ SSSSS SPSSSSSPS S
Sbjct: 260 SSATTPWSSSSSSSSPSSGTPSPSSSSSPSSS 355
>CN825561
Length = 646
Score = 28.9 bits (63), Expect = 1.3
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -2
Query: 289 PKVLPQLRVTARTRRWSTVSSSSSSPSSSSSPSFSLSYK 327
P + P L + T + SSSSSS SSSSS S+SL K
Sbjct: 189 PPLDPLLLYRSVTTLFLLPSSSSSSSSSSSSSSYSLYLK 73
>BP059341
Length = 471
Score = 28.9 bits (63), Expect = 1.3
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 305 STVSSSSSSPSSSSSP 320
S +SSSSSSPSSSSSP
Sbjct: 351 SALSSSSSSPSSSSSP 398
>BP053494
Length = 421
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 278 EIVSSNNQRNAPKVLPQLRVTARTRRWSTVSSSSSSPSSSSS 319
+I+ +N + LP+L T W +SSS+SPS+S +
Sbjct: 70 QIIEPSNYSGSRGNLPKLLTGPLTLPWGEANSSSTSPSNSEA 195
>TC18022 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycosylase XET2
, partial (35%)
Length = 533
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 305 STVSSSSSSPSSSSSPSFSLSYKKRKLNS 333
S+ SSS SPSSSSS S S S+ + L++
Sbjct: 123 SSCSSSKKSPSSSSSSSSSQSWLRESLDA 209
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 281 SSNNQRNAPKVLPQLRVTARTRRWSTVSSSSSSPSSSSSPSFSLS 325
SS++ ++ +L L + R W S SSS SSSSS S +LS
Sbjct: 629 SSSSSSSSSSLLGLLVLRPEGREWRPCCS*SSSSSSSSSSSSALS 495
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,863,357
Number of Sequences: 28460
Number of extensions: 110633
Number of successful extensions: 2359
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of query: 345
length of database: 4,897,600
effective HSP length: 91
effective length of query: 254
effective length of database: 2,307,740
effective search space: 586165960
effective search space used: 586165960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146723.15